Medicago truncatula (barrel medic): 11410144
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Entry
11410144 CDS
T01716
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03013
Nucleocytoplasmic transport
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
11410144
09122 Translation
03013 Nucleocytoplasmic transport
11410144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11410144
03041 Spliceosome [BR:
mtr03041
]
11410144
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
11410144
Spliceosome [BR:
mtr03041
]
Complex C
Other components
EJC/TREX
11410144
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
11410144
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
ABPF_N
FapA
Motif
Other DBs
NCBI-GeneID:
11410144
NCBI-ProteinID:
XP_003631008
UniProt:
G7LCB7
LinkDB
All DBs
Position
8:complement(48908686..48928689)
Genome browser
AA seq
1858 aa
AA seq
DB search
MSVPPVQCVFITEDCVREWKSSNNASFKLSQPVPLLRFLYELSWTMVRGELPFPKCKLAL
DSVVFSDKASPHKIASNFADIVSQMAQDLTLSGEFRSRLIKLARWLVESELVPVRLLQER
CEEEFLGEAEFIKIKAQELKGKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRDSEA
PTQKGSTSTIGIIKSLIGHFDLDPNRVFDIVLECFELQPDNDVFIELIPIFPKSHASQIL
GFKFQYYQRMEVSNPVPYGLYRLAALLVKQDFIDLDSIYAHLLPKDVEAFEHYSTFSSKR
LDEANKIGKINLAATGKDLMDEEKTGDVTIDLFAALAMETDAVDERKSELQNNQTLGLLI
GFLSVDDWYHAHVLFERLSALNPVEHIQICDSLFRLIEKSISSPYDVIRQAHLQNSGLST
GGSTDAMDVDNPSGHNSFIDLPKELFQMLGCTGPFLYRDTMLLQKVCRVLRGYYLSALEL
VSQGGALNPQFHVGNPNLHLKEARLRVEDALGACLLPSLQLVPANPAVGQEIWELMSLLP
YEARYHLYGEWEKDDDRYPMLLATRQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPM
TVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLALGGRDKLKDDGLNLSD
WLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKRGQGIELVLLQELIQQMANVQYTENLT
EEQLDAMAGSETLKYQATSFGMTRNNKALIKSTSRLRDALLPKDEPKLATPLLLLLAQHR
SLVLVNADAPYIKMVSEQFDRCHGTLLQYVDFLGSAVTPGSNYAILIPSLDDLIHLYHLD
PEVAFLIYRPVMRLFKSQKTPDVCWPMEDKYSASDSSTNFEPDPTDYSGSMVLDIGSNKN
PISWSDLLDTVKTMLPPKTWNSLSPDLYATFWGLTLYDLHVPKNRYESEIAKLHANLKSL
EELSDNSSSAITKRKKEKERIQESLDRLSSELHKHEENVVSVSRRLFHEKDKWLSSCPDT
LKINMEFLQRCIFPRCTFSMPDAVYCAMFVHKLHSLGTPFFNTVNHIDVLICKTLQPMIC
CCTEYEVGRLGRFLYETLKIAYHWKSDESIYERECGNMPGFAVYYRNPNGQRVTYGQFIK
VHWKWSQRITRLLIQCLESSEYMEIRNALIMLTKISSVFPVTRKSGINLEKRVAKIKSDE
REDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKPAPSMTKSAAGNSAAVQSGIGLQF
SQTESASGKHLDSGNTVKDQTVKTKTADGKSERTESLTATKSDSGHGKLKGSSMVNGVDA
QSSLASPAGQSGALKSVENQKQVEESISRAPDEHITRNVESRPSVKQRSVATGSLLKPSK
QDPLKEDGRSGKTVTRTSGSSSSDKDLQTHASDGRHTGTNISSSFSANGNSVSGSAKGLA
QAATTAFDGSGNESKAEVGAAKFSMVKDDVNEFADFTRGSSSRVVHSPRHENTATSKSSD
KIQKRAGSVDELDRLGKRRKGDIDLRDLEGEVRFSEREKLMDPRLADDKVGPDELGVYRT
GDKTLERPKEKGTDRYEREHRERLDRLDKSRGDDFVVEKPRDRSIERYGRERSVERVQER
GSERSFNRLPDKAKDDRSKDDRNKLRYNDATIEKSHAEGRFHGQSLPPPPPLPPNMVPQS
LGAGRRDEDADRRYGATRHSQRLSPRHEEKELRRSEETVILQDDPKRRKEDDFRDRKREE
MKVEEREREKASILKEEDLNAASKRRKLKREHLPTMEPGEYSPVAPPLSGIGMSQAYDGR
DRKGPMIQHASYIDEPSLRIHGKEVASKLNRRESDPLYDREWDDEKRQRADQKRRHRK
NT seq
5577 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtgccaccggtgcagtgtgtattcataacagaagactgtgttcgcgaatggaag
agttccaacaacgcttctttcaaactctcccaacccgttccattgctcagattcctctat
gaactctcttggactatggttcgaggtgaattaccgtttcccaagtgtaaattagcgtta
gattctgttgtattttcggataaagcttctcctcacaaaattgcatcaaattttgcggat
atagttagccagatggctcaagatcttacattgtcaggagagtttcgttctcgcctcatt
aaactggcaagatggcttgtagaatctgaattggttccagttaggctacttcaagaacgt
tgtgaggaagaatttttgggggaggctgaatttatcaaaattaaggctcaggagttaaag
ggaaaagaggtcagagttaatacacgacttctttaccagcaaacgaaattcaaccttctc
agagaagaaagtgagggctatgccaaactggtcactcttctttgtcgggactctgaagcg
ccaactcaaaaaggatctacatcaacaattggcattattaagtcattgattggccatttt
gatttggatccaaaccgtgtttttgatattgtacttgagtgttttgaacttcagcctgat
aatgacgtgtttatagagctgattcctatttttcccaagtctcatgcttcacagattctt
ggatttaaatttcaatattatcagcgcatggaagtcagcaatcctgtaccatatgggctt
tatagacttgcagctctgctggtgaagcaagattttattgatcttgatagcatttacgct
catttactccccaaggacgtagaagcatttgagcattatagcactttctcttccaagcgc
cttgatgaggctaataaaattggaaaaatcaacctagctgctactggaaaagatctaatg
gacgaggagaaaacgggggatgtcaccattgatctctttgccgccttagccatggaaact
gatgcagttgacgagcggaaatccgagcttcaaaacaatcaaactttgggcttgcttatt
ggcttcctttctgtagatgactggtatcatgcacatgtactgtttgaacgcctctcagca
ctcaatccagtggaacatatccaaatatgtgatagtttgtttaggcttattgagaagtca
atttcttccccgtatgatgttattcgtcaagcacatcttcaaaactctggattgtccact
ggaggcagcactgatgctatggatgttgataacccttcaggacacaattctttcatagat
cttccaaaggaactttttcagatgcttggttgtactggaccttttctctaccgagatact
atgctgttacagaaggtttgcagggtgttgagaggttattacctttctgctcttgagctt
gtaagtcagggcggtgccttgaatcctcaatttcatgttggaaatcctaacctacatttg
aaggaagcaaggctaagagtggaggatgctttaggagcttgtctactaccttctctacag
ctggttcctgctaatccagctgttggccaggaaatttgggaactaatgagtcttcttcct
tatgaggcacgatatcatttatatggtgaatgggaaaaagatgacgatcgctatcctatg
ctgttggctacgagacaaacagccaagttggacactagacgtattttgaaacggctggca
aaggaaaatttgaagcagctgggtcggatggttgcaaaattagctcatgccaaccctatg
actgtccttcgaacaattgttcaccagattgaggcatacagagacatgataactcctgta
gtggatgcgtttaagtatttaactcagcttgaatatgatatattggaatacgttgtgatt
gagcgattggcacttggaggacgtgataagttgaaggatgacgggcttaacttgtcagac
tggcttcaatctctagcttctttctggggccacctatgtaagaagtacccatcaatggaa
ttgcggggccttttccagtatcttgtgaaccagttaaaaaggggacaaggaattgagctt
gttctattgcaggagctcatccaacaaatggcaaatgttcagtacacagagaacttgacg
gaggagcagctggacgctatggcagggagtgagactctgaaatatcaagcaacttctttt
gggatgacccgaaataataaggcattgataaagtcaactagcagacttagagatgcatta
cttccgaaagatgaaccgaagttggcaacccccctcttgcttcttcttgctcaacatcgt
tctctggttctcgtcaatgcagatgcaccctacatcaagatggtcagcgaacagtttgat
agatgccatggaactctccttcaatatgtggattttctaggcagtgcagtcacaccagga
tcaaattatgctattcttattccctctcttgatgacttgatccatctttaccacttggac
cctgaggttgctttcttgatatatcgccctgttatgagacttttcaagtctcagaagact
cccgatgtttgctggcccatggaagataaatattctgcaagtgattcatccacaaacttt
gagcctgaccctacagattattctggtagtatggttctagatattggctccaacaaaaat
cccattagttggtcagatcttcttgatactgttaaaaccatgttgcctccaaaaacatgg
aatagcctatctcccgatctttatgcaacattttggggtcttacattatatgacctgcac
gttccaaaaaaccgttatgagtcagaaatagccaagctgcatgctaatcttaaatctttg
gaggagctttctgacaattcaagctcagcaatcaccaagaggaagaaagaaaaggaaaga
attcaagaatctcttgatcgtctgagtagtgaactgcataaacatgaagagaacgtcgta
tctgtcagcaggcggctttttcatgagaaagacaaatggttaagttcctgtcctgatacc
ttgaagattaacatggagtttcttcagcgttgtatatttccacgctgtactttcagtatg
ccagatgctgtctattgtgctatgtttgtacacaaacttcattcccttggaacccctttt
tttaacacagtcaaccacattgatgttcttatttgcaaaacccttcaaccaatgatatgc
tgctgcactgaatatgaggttggcaggcttggcaggtttctctatgagactttgaagatt
gcttaccattggaagagtgatgaatctatttatgaacgtgagtgtggaaacatgccggga
tttgctgtttattatagaaatcctaacggccagcgagttacatatggacagttcattaag
gtacactggaaatggagtcaaagaatcacacggttactaattcagtgtctagaatctagc
gagtacatggagattagaaatgctcttataatgttgactaaaatttctagtgtttttcct
gttacacggaagagtgggataaaccttgaaaagcgggtagctaagattaaaagtgatgaa
agagaggatcttaaggtgttggcaactggtgtagcagcagcactggctgctaggaagcca
tcctgggttaccgatgaagaatttggtatgggttatcttgaattgaagcctgcaccatct
atgactaaatctgcagcgggaaattctgccgctgtacaaagtgggataggtcttcaattt
tctcaaactgaatctgccagtgggaaacatctggactccggaaacacagtcaaagaccag
acagtaaaaacaaaaactgcagatgggaagtcagagagaactgaaagccttacagcgaca
aaatctgattctggccacggaaaactcaagggtagctcaatggtgaatggagtggatgca
caatcatctctagcctcacctgctggacaatctggggcattaaaatctgtggaaaatcaa
aagcaagtggaagaatccataagtagggcaccggatgaacacattacaagaaatgttgag
tcaagaccctctgtgaaacaacgttcagtggctactggttcacttttgaagccatcaaaa
caagatcctttgaaagaagatggtagatctggaaaaactgttaccagaacttctggttcc
tcaagcagtgacaaggatcttcagacccatgcatcagatggaagacacacaggaacaaac
atttcttcttcatttagtgctaatggtaacagtgtttcaggttctgcaaaaggtttggct
caagcggcaacaactgcatttgatggttctggtaacgaatcaaaggcagaggttggagct
gccaaattttctatggtgaaggatgatgtaaatgagtttgctgacttcacaagaggatcc
tcttctcgtgtagttcattctcctaggcatgaaaacacagctacctcaaagtctagcgat
aaaattcagaagcgagctggttctgttgatgagctagacagactaggtaaacgacggaaa
ggggatatagatctaagagatttagaaggtgaagttcgattttctgaaagagaaaagctg
atggatcctcgattggctgatgacaaagtgggaccagatgaacttggtgtatacagaaca
ggtgataaaacattggaaaggcctaaagaaaaaggcactgatagatatgaaagggaacac
agggaaagattggatcgtctggacaagtctcgtggtgatgactttgttgtagaaaaaccc
agggacaggtcgatagaaagatatggaagagaacggtctgtggagagagtgcaagaaagg
ggtagtgagaggagtttcaatagactccctgacaaggctaaggatgatagaagtaaggat
gatagaaataaattacgatacaatgatgcaacaatagaaaaatctcatgctgagggccgc
ttccatggacaaagcttgcctccgccaccccctttacctcctaatatggttcctcaatct
cttggggctggtaggcgtgatgaagatgctgataggaggtatggagctacaaggcattct
caaagactttctccaaggcatgaagaaaaagaactgagacggtctgaagagactgtgatt
ttgcaggatgatcccaaacgtagaaaagaagatgattttcgtgatcggaagcgtgaagaa
atgaaggtggaagagagggaaagagagaaagcaagcattctaaaagaagaggatttaaac
gctgcatccaagaggcgtaaacttaagagggagcatctaccaactatggagcctggggag
tactcaccagttgcacctcctctctccggtattggtatgtcacaagcgtatgatggaaga
gacagaaaggggccaatgattcagcatgccagttacatagatgaaccgagtcttaggatt
catggtaaagaggtagccagcaagctgaatcgtcgtgaatcagatcccttgtatgaccgt
gaatgggatgatgagaagagacaaagagctgatcaaaagagaaggcatcggaagtaa
DBGET
integrated database retrieval system
