Medicago truncatula (barrel medic): 11410150
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Entry
11410150 CDS
T01716
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
11410150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11410150
03012 Translation factors [BR:
mtr03012
]
11410150
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
11410150
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
11410150
Translation factors [BR:
mtr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
11410150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
T2SSE
nSTAND3
AAA_19
Dicer_dimer
AAA_16
ATPase
Motif
Other DBs
NCBI-GeneID:
11410150
NCBI-ProteinID:
XP_003631052
UniProt:
G7LCG1
LinkDB
All DBs
Position
8:49133262..49148586
Genome browser
AA seq
1172 aa
AA seq
DB search
MPFPMMRIRMRIPSAGIFRLAVRHFLTTTTTTTTNLRIRLSSSSPAALNHHRHRTFALPF
FHQQTSTYGRFAFKDVSSDESDLEFASSRPQQQQLGDSTLENIDSWRWKLTMLLRNKDQQ
EVVSNEKKDRRDFLQLETLATRMGLYSRQYARVVVFSKAPLPNYRPDLDDKRPLREVTLP
FGVHREVDTHLLAHLSHKATKRVGSFDDSLHRSRDDGSIPADEGIYGHPEPMSHNSVAKE
KILQRRSLQLHHQQQDWQESPEGQKMLEFRRSLPAFKEKDAFLKVVSENQVIVVSGETGC
GKTTQLPQYILESEIEAARGSLCNIICTQPRRISAISVSERVAAERGEKLGESVGYKVRL
EGMRGRDTRLLFCTTGVLLRRLLVDRSLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRR
PDLRLILMSATLNAELFSSYFDGAPTIHIPGFTFPVRAQFLEDILERTGYRLTPYNQIDD
YGQEKTWKMQKQAQSFKKRKSQIASAVEDALEVADFKGYSLRTKESMSCWNPDSIGFNLI
EHVLCHIVKNERPGAALVFMTGWDDINSLKDKLHAHPLLGDQSRVLLLACHGSMSSSEQK
LIFENPGGGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKA
AARQRKGRAGRVQSGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEF
LSSALQPPEPLSVQNAVDYLKIIGALDENENLTVLGCKLSMLPVEPKLGKMLILGAIFNC
LDPILTVVAGLSVRDPFVVPADKKDLAESAKAQIAARGYSDHLALVRAYDGWKDAEAQQA
GYEFCWRNFLSSQTLRAIDSLRKQFFHLLKDIGLVGNNSETNNKWSNEEHLLRAVICAGL
FPGISSVVNKEKSISLKTMEDGQVLLYANSVNGSVAKIPYPWIVFNEKIKVNTVFLRDST
GISDSMLLLFGGNISKGGLDGHLKMLGGYLEFFMKPELAKTYSTLKRELEELVHKKLADP
MFDIHSHNELLSAVRLLVSEDNCDGRFVYGHQVLPQLKKETKSKSGDGAGGDNSKNQLQT
FLSRAGHQLPTYKTQELRNNQFRSTVIFNGLDFVGQPCNSKKLAEKSAAAEAILWLKGDN
THSSGDIDHASVLLKKRNKKSKKKSFSDAKWS
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgccgtttccgatgatgcgaattcgaatgcggattccctccgccggcatcttcagactc
gccgttcgtcatttcctcactaccaccaccacaacaaccactaacctccgcattcgtctt
tcatcttcctcacccgccgccctaaaccaccatagacacaggaccttcgctcttccattt
tttcaccaacaaacctccacttacggccgttttgccttcaaagacgtttcctctgatgaa
tccgacctcgaattcgcttcttctcgccctcaacaacaacaactgggagattcgactctc
gaaaacattgattcttggagatggaaactcaccatgcttcttcgcaataaagatcagcaa
gaagttgtgtccaatgagaaaaaagaccgtcgtgattttctgcaacttgaaactttagct
accaggatgggcttatacagtcgacaatatgcaagagttgttgtctttagcaaggcgcct
ttgccgaattatcgccctgacctcgatgataagcgtccgctgagagaggtaaccttacca
tttggtgttcatagagaagtagacactcatctccttgctcatctttcacataaggctaca
aaaagagtaggctctttcgatgattccttgcatagatcaagggatgatggaagcattcct
gcggatgaagggatttatgggcatccggaacccatgagccataatagtgttgccaaagag
aaaatccttcaacgaagaagtttgcaactgcatcatcaacaacaagactggcaggaatct
cccgaaggccaaaagatgcttgaatttcgccgaagtcttcctgcattcaaagagaaagat
gcatttttgaaagttgtttcagagaatcaggtcattgtcgtctcaggtgaaactggttgt
ggtaagaccacacaacttcctcaatacatattagaatctgagattgaagctgcacgtgga
tctctatgtaacataatttgtactcagcctagaagaatatctgctatatctgtttctgaa
agagttgcagcagaacgtggggaaaaattgggagaatctgttggttataaagttcggttg
gagggtatgagagggagggatactcgtcttcttttttgcaccacaggcgtgttattgcgg
agactacttgtggatagaagtttaaaaggtgtaactcatgttattgttgatgaaattcat
gaacgtggaatgaatgaagattttcttctcattgtcctgaaggatctcctccctcgccgc
cctgatttgagattaattttgatgagtgcaaccttaaatgctgagcttttttcttcatat
tttgatggtgccccaacgatacatatccctgggtttacctttccagttcgagcacaattt
cttgaggatattctggaaaggaccggatatcgtttgactccttataatcaaattgatgac
tatggtcaagaaaaaacatggaaaatgcagaaacaagcccagtctttcaaaaaacgaaag
agccagattgcttctgctgttgaggatgcattagaggttgcagactttaaggggtatagc
ctacgcaccaaggagtcaatgtcctgctggaaccctgattcaattggtttcaaccttatt
gaacatgtgctttgccacattgttaagaatgaaaggccaggtgctgcgttggtttttatg
actggttgggatgatataaactctttgaaggataaactccatgctcatcctttgttgggt
gatcagagccgagtattacttcttgcctgccatggctctatgtccagctcagagcagaaa
ttaatatttgaaaatcctggaggaggggtgaggaagattgttctggctactaatatggca
gagactagtattactatcaatgacgttgtatttgtggttgattgtggaaaagcaaaggag
acatcatatgatgcattaaataacactccttgtttgcttccatcttggatctcaaaagct
gctgccagacagagaaaaggaagggcaggtcgtgttcaatctggcgaatgctaccatctt
tatcccagatgtgtttatgatgcttttgctgattatcaattgccagagcttttaagaaca
cctttacagtccttatgtctacaaataaaaagtctacaacttggaagcatctctgagttt
ttatctagtgctctccagccaccagagcctctgtcggttcaaaatgctgttgattatttg
aaaattattggtgctttagacgagaatgaaaatttgacagttctagggtgcaagttgtca
atgcttccggtagagcctaagcttggcaagatgctcatcttgggagctattttcaactgt
ttggatcccatattgactgttgttgctgggcttagtgtgagagatccatttgttgtgccg
gctgacaagaaggatcttgcagagtcggccaaggcccagattgctgctcgtggatacagt
gatcatcttgcacttgttcgtgcttatgatggttggaaagatgctgaagcacagcaagct
ggttatgagttctgttggcgtaattttctctcgtctcaaacccttagggctattgattct
ctccgaaagcaattctttcacttgctcaaagatattggtctggttggcaacaattctgaa
accaacaataaatggagtaatgaggagcatctgctccgagcagttatctgtgcgggtttg
tttcctggaatatcctctgttgtgaacaaggaaaagtcaatatcactgaaaacaatggag
gatggtcaggttcttctgtatgctaactcggtaaatggaagtgtagccaaaattccatac
ccatggatagtgtttaatgaaaagattaaagtgaatacagtattccttagggattcaact
ggcatatctgattccatgctgctcttatttggcgggaacatatccaaaggtggactggat
ggtcacctaaaaatgttgggagggtatctagaatttttcatgaaaccagaattagccaag
acgtactcaactttgaagagggaactggaagaattggtacataaaaaacttgcggatcct
atgttcgatatacactcgcataatgagcttctttcagctgttagactgttggtatcagag
gacaactgcgacggaagatttgtctatggtcaccaggtcttaccacagttaaagaaggaa
acgaaatccaaaagtggtgatggagctgggggtgataattctaaaaatcagcttcaaaca
ttcctcagcagggctggacatcagttaccaacttacaaaacacaggagctgagaaacaat
caattccgttctactgtcatattcaacggcttggattttgttggccagccatgcaacagc
aagaaactagcagaaaaatctgctgctgctgaggctattctatggttaaaaggggataat
acccattcatctggtgatattgatcatgcatctgtgcttttgaagaaaaggaacaagaaa
agtaaaaaaaaatcgtttagtgatgctaaatggagttaa
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