Medicago truncatula (barrel medic): 11410645
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Entry
11410645 CDS
T01716
Name
(RefSeq) probable pectate lyase 16
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr00040
Pentose and glucuronate interconversions
mtr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
11410645
Enzymes [BR:
mtr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
11410645
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
11410645
NCBI-ProteinID:
XP_024639667
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Position
5:7258120..7259685
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AA seq
350 aa
AA seq
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MIDRCWRPNPEWRKHRQQLATCSVGYAGKMTNNIGKGIIQYKVTDPNDDPINPQPGTLRY
GASVIQGKVWITFKKDMNIKLIKSLLISSFTTIDGRGVNVHIADNACLMIFKATNIIIHS
IRIHHCKAQTPGMVMGPNGKVISLGQVDGDAIRLVTASKIWIDHNTLYDCEDGLLDVTRG
STNVTVSNNWFREQDKVMLLGHDDGYVRDINMKVTVVYNHFGPNCNQRMPRIRHGYAHVA
NNLYLGWMQYAIGGSMGPSLKSESNLFIAPKVGSKEVTWRKIGHGNGDKWEFHSVRDAFE
NGASFAISKGSRVPKPNYSKEQGFKVVDVKSVRTLTRSSGAFQCSRTSIC
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgattgatcgatgttggagaccaaatcctgaatggagaaaacatagacaacaactagcg
acttgctcggtaggctatgctggaaagatgacaaacaacattggtaagggtatcatccaa
tataaagttactgacccaaatgatgatcctataaatcctcaacctggtacgttgagatat
ggagcttctgtaattcaaggtaaagtgtggatcacattcaaaaaagacatgaacattaaa
ctcatcaagtcccttctcatcagcagtttcacaacaattgatggtcgcggagtcaatgtg
cacattgctgataatgcatgcttaatgatattcaaggccaccaacattatcattcatagc
attcgaattcatcattgcaaagctcaaacaccggggatggtgatggggccaaatgggaag
gtgatttctttggggcaagtagatggagatgcaattagactggtcaccgcttctaaaatt
tggattgatcataatacactttatgattgtgaagatggtcttcttgatgtcacacgaggt
tctactaatgtgactgtttccaataactggtttagagaacaagataaggttatgcttctt
ggacatgatgatgggtatgtgagggacataaacatgaaggttactgtcgtgtacaatcat
tttggaccaaactgcaaccaaagaatgccaagaattcgtcatggatatgcacatgtagcc
aacaatctttacttagggtggatgcaatatgccatcggtggaagcatggggcctagcctc
aaaagtgaatctaacctcttcatagctcctaaagttgggagtaaagaggtaacatggaga
aaaattggtcatggaaatggagacaaatgggaatttcattcggtaagagacgcttttgaa
aatggagcctcctttgcaatatcaaaaggaagtcgtgtgccaaagccaaattatagcaaa
gaacagggttttaaagttgttgatgttaaatctgtaagaacattaacaagatcttcaggt
gcatttcaatgtagtagaacctctatatgttga
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