Medicago truncatula (barrel medic): 11411031
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Entry
11411031 CDS
T01716
Name
(RefSeq) vacuolar sorting protein 18 isoform X1
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
11411031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mtr04131
]
11411031
Membrane trafficking [BR:
mtr04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
11411031
Hops complex
11411031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-RING_Vps41
zf_RING_Vps8
zf-RING_11
zf_RING_Vps8_fungal
Nup54_57_C
RPN1_RPN2_N
zf-RING_UBOX
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
11411031
NCBI-ProteinID:
XP_024628389
LinkDB
All DBs
Position
8:29124006..29137295
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AA seq
984 aa
AA seq
DB search
MDHGRQVFTVDLLERYAAKGHGVITCMAAGNDVIVIGTSRGWVIRHDFGAGDSHEFDLSA
GRPGDQSIHRVFVDPGGCHCIATVVGPGGAETFYTHAKWTKPRVLSKLKGLVVNVVAWNR
QQITEVSTKEVILGTDNGQLHELAVDEKDKKEKYIKFLYELTELPEALMGLQMETASVIN
ETRYYVMAVTPTRLYSFTGFGSLETVFAGYLDRAVHFMELPGDIPNSELHFYIKQRRAVH
FAWLSGAGIYHGGLNFGGQHSGNGNFIENKALLNYSKLSEGVEAVKPSSIALSEFHFLLL
LENKVKVVNRISENIIEELQFDQTSDSAAKGIIGLCSDATAGLFYAYDQNSIFQVSINDE
GRDMWKVYLDMNEYAAALANCRDPFQRDQVYLVQAEAAFSSKDYFRASSFYAKINYILSF
EEVTLKFISAGEQDALRTFLLRKLDNLEKDDKCQITMISTWATELYLDKINRLLLEDDSS
LENSDSEYQSIIKEFRAFLSDSKDVLDEATTMKLLESYGRVEETVYFASLKGQYEIVVHH
YIQQGEAKRALEVLQKPSVSVDLQYKFAPDLIALDAYETVESWMTTKNLNPRKLIPAMMR
YSSEPHAKNETHEVIKYLEFCVHKLHNEDPGVHNLLLSLYAKQEDDSSLLRFLECKFGKG
PENGPEFFYDPKYALRLCLKEKRMRACVHIYSMMSMHEEAVALALQVDPELAMAEADKVE
DDEDLRKKLWLMIAKHVVEQEKGTKRENIRMAIAFLKETDGLLKIEDILPFFPDFALIDD
FKEAICSSLEDYNKQIEQLKEEMNDTTHGADNIRNDISALAQRCTVIDRDEECGVCRRKI
LNAGREFGIGRGYTSVGQMAPFYVFPCGHAFHAQCLIAHVTRCTVETHAEYILDLQKQLT
LISSETRRESNGNLASEGSIPSTTSVDKLRSQLDDAIASECPFCGDLMIREISLPFILPD
EEQHVLSWDLKPNVGSQRNIPLSV
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atggatcatgggaggcaagtgttcacggtggaccttcttgaacgatatgctgcaaagggt
catggagttatcacttgtatggctgctggaaatgatgtcattgttattggaactagtaga
ggatgggtcattcgccatgattttggggctggtgattcacatgagtttgatctatctgcg
ggtcgtcctggggaccagtcaatccacagagtttttgtggatccaggagggtgtcattgt
attgccactgttgttggtccggggggagctgaaactttctatactcatgcaaaatggacc
aaaccgcgagttttgagcaagcttaaaggtcttgttgtgaatgttgttgcatggaacagg
caacagataactgaagtttccacaaaggaagtcattctcggtacagataacggtcaactt
catgagctggctgtggacgagaaggacaaaaaggaaaaatatatcaagtttctctatgaa
ttgacagagcttccagaagctttaatgggtttacagatggaaacggccagcgttattaat
gagactagatattatgtgatggcagttactcctacccggctttactctttcactggcttt
gggtcactagaaactgtgtttgcaggttatttagaccgtgcggtgcatttcatggaactt
cctggtgacataccaaacagtgaattgcatttttacattaagcaacgaagagctgtacat
tttgcatggctctctggagctggcatttatcatggtggcttaaattttggagggcaacat
agtggaaatggaaattttattgaaaacaaggctcttttgaactactccaagttgtctgaa
ggagttgaagcagttaaaccaagttcaatcgcattgtctgaattccatttcctgctgctt
ttagagaataaggtcaaggtcgtaaatagaattagtgagaacatcattgaagaacttcaa
tttgaccaaacttctgattcagcagcaaagggtattattggattgtgtagtgatgccacg
gctggtttattctatgcgtatgatcaaaactccatctttcaggtgtcaatcaatgatgag
ggtcgagatatgtggaaagtgtatcttgacatgaacgaatatgctgctgctttagcaaat
tgtcgtgacccttttcaaagggaccaagtatatttagtgcaggctgaagctgcgttttcc
tctaaagattattttagagcctcatctttctatgccaaaatcaattatattttatcattt
gaggaggtcactttgaagttcatcagtgctggcgaacaggatgctttgaggactttctta
ttgcggaagcttgataatttagaaaaggatgataaatgccaaataacaatgatatccaca
tgggcaactgagttatacctggacaagataaaccgactgcttttagaagacgattcttct
ttggagaatagcgattcagagtatcaatcaattattaaagagtttcgtgcttttctcagt
gacagcaaggatgtattggatgaagcaactacaatgaaacttttagaaagttatggaagg
gttgaagaaacggtatattttgctagcttaaaagggcagtatgagattgtagttcaccat
tacattcagcaaggagaagcaaaaagagcactggaagtgcttcagaaaccttctgtgtct
gtagaccttcagtataaatttgcgccagaccttattgctcttgatgcatatgaaactgtg
gagtcatggatgactacaaagaatttgaacccaaggaaactgattcctgcaatgatgcgt
tattcaagtgaacctcatgcaaagaatgagacgcacgaagtcattaaatatcttgaattt
tgtgttcataaattgcataatgaagatcctggtgttcataacctgctgctttctttatat
gcaaagcaggaggatgatagttcacttctacgattcctagaatgtaaatttggaaaagga
ccagaaaatggtcccgaattcttctatgatcccaagtatgctttacgtctttgcctcaag
gaaaaacgaatgcgagcatgtgttcatatatacagcatgatgtctatgcatgaagaagcc
gttgctcttgccctacaggttgatccagagttagctatggctgaagccgataaggttgaa
gatgatgaagatttaagaaagaagctctggctcatgattgccaaacatgttgttgaacaa
gaaaaaggaaccaagagggaaaacataaggatggcaattgcatttcttaaagaaacggat
ggcttgctgaagattgaggatatattaccgttttttccagattttgccctgattgatgac
ttcaaggaagcgatctgctcatcactggaagattacaacaagcaaattgaacagttgaag
gaagagatgaacgacacaacccatggggctgacaacatcagaaatgatatcagtgcactt
gctcaaagatgcactgttattgatcgtgatgaggaatgtggggtatgtcggcgaaagatt
ctaaatgctggtagggagtttggcataggtcgtggttatacatcagtaggacaaatggct
ccattttatgtctttccgtgcggacatgccttccacgcacaatgccttattgcccatgtg
actcgttgtacagttgagacccatgctgagtatattctggatctacagaagcaacttact
ttgataagcagtgaaacaaggagagaatccaatggcaatcttgcttcagaggggtccatt
cctagcacgacctctgtagataagctccgatcgcaactagatgatgctatagctagtgaa
tgcccattttgcggtgacttgatgatccgagagatttctttgccatttatccttcctgac
gaggagcagcatgtgctatcatgggatttaaaaccaaacgttggaagccagagaaatatc
ccattatctgtctga
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