Medicago truncatula (barrel medic): 11411068
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Entry
11411068 CDS
T01716
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
11411068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11411068
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
11411068
mRNA degradation factors
5'-3' decay
Decapping complex
11411068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_HPS5
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
GerPC
RH3_dom
Motif
Other DBs
NCBI-GeneID:
11411068
NCBI-ProteinID:
XP_003594356
UniProt:
G7ISM5
LinkDB
All DBs
Position
2:10209937..10220285
Genome browser
AA seq
1378 aa
AA seq
DB search
MASSGNPNQNQQQTQFDLQKLFKGTTQTNQIPSNLNTSPSFPSPSLSTPPPSSYPTPSSS
YPPPTGTYPYHLPYNIPFPENPLILQHHPQMHAPQTQRPIFQSPSSPNPNTTSGARLMAM
LNTQNPPSNQETSSVSSEYSVSANPVVSSGSSTVNVASPQSTPARMLSAKVPKGRHLKGE
NVVYDIDVKLPGEMQPQLEVTPITKYASDPGLVLGRQIAVNRSYICYGLKLGAIRVLNIN
TALRYLLRGHTQRVSDMAFFAEDVHLLASASTDGRIFIWKINEGPDEEDKPQITGRVILA
IQILGESESVHPRVCWHPHKQEILIVAIGNRILKIDTMKAGKGETYSAEEPLKCNIDKLI
DGVHLIGKHDDNITELSMCQWMKSRLASASADGTVKIWEERKATPLAVLRPHDGKPVNSV
TFLTAPHRPDHIVLVTAGPLNQEVKIWVSGYEEGWLLPSDSESWICVQTLDIRSSSEANP
DEAFFNQVVALPRAGLVLLANAKKNTIYAVHIEYGPNPTATRMDYISEFIVTMPILSLIG
TSDSLPDGDHLVQIYCVQTQAIQQYGLNLSQCLPPPLDNIELEKTEPSVSRAWDGSADLE
TVNMPQVPLSSSESAVNLSSSNIHGPPEAFVSDNKIKPNDLPSHNSFEYVHAAPPPLPPS
PRLSRKLSASKSSSNILATSSASTGDHKNEPANLDPSVEERIKSEKDNVADVPVSGDNLQ
ESDKVVQTDVSVVSDSPITFKHPTHLVTPSEIFSKAALSPANSNISEGVAAHSDAEKFEV
EVKVVDEIETGSNQENTEHDRDRGSHTDAAKKKEKLFHSQASDLGIRMARDAYNIERVHQ
ADKDTYNTEGVRQADRDIYNIEGDLQADNTNTIDASENNRASIEGEVQDTSKEVPENIRE
PEVVAATLPSPAPSTKGKKQKGKGSQVSGTPASPSPFNSADSSKDQGGNPAGSSMESALP
QLSTIQDMMGQLLNMQKEMQKQMNAMVSVPVTKEGKRLEGSLGRSMEKVVKANTDALWAH
IQEENAKQEKLEQDHVQQITNLISNYINKDMSSLLEKIIKKEISSIGTTITRSLSQNMEK
AISTAVTESFQKGVGDKALNQLEKSVSSKLEATVARQIQAQFQTTGKQALQEALKTSVEA
TLVPAFEKSCRVMFEQIDSTFQNGLLNHTTAIQQQYDSTHSPLAATLRETINSASSLTQT
LSGQLADGQRKLLEMAANSKVASDPFVTQINNGLHEMTEDPTKELSRLTSEGKFEEAFTG
ALHRSDVSIVSWLCSQVDLSSILTMVPLPLSQGVLLSLLQQLSCDINTDTPRKLQWMTDV
AAAINPEDTRIAAHVRPILDQVYRTLSHHRSLPSNSPSEASTIRLLMHVINSVLMSCK
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttctggaaatccaaatcaaaatcaacaacaaacccaatttgatttgcaaaag
cttttcaaaggaacaacacaaacaaatcaaattccttcaaatttgaacacttctccatca
tttccttcaccttcactttctacaccccctccttcttcttaccctaccccctcttcttct
taccctccaccaactggtacatacccttatcatctcccttataatatcccctttcctgaa
aaccctcttatccttcaacatcaccctcaaatgcatgcacctcaaactcaaagacccatt
tttcaatctccttcatctccaaatccaaacactacctctggtgcaaggttaatggctatg
ttgaacactcaaaaccctccttcaaatcaagaaacttcatcggtttcttcagagtattcg
gtgtcagcaaatcctgtggtgagttcaggttcttctacagtgaatgttgcaagtcctcag
tcaacacctgcaaggatgctgagtgctaaggttccaaagggtaggcatttgaaaggagag
aatgttgtttatgatattgacgttaagttgccaggggaaatgcagccacagcttgaagtt
actccaattactaagtatgcatctgatcctggtcttgtgcttgggagacaaattgctgtg
aatagatcttatatttgctatggactcaaactcggggctattcgcgttcttaatatcaat
actgcattgagatatttgcttcgaggtcatactcagagagtatcagacatggctttcttc
gcagaggatgttcacttgttagccagtgctagtactgatgggagaattttcatatggaaa
atcaatgagggacctgatgaggaagacaagcctcaaattactggaagagttatcctggcc
attcaaatactaggagagagtgagtcagttcatccacgagtatgctggcatcctcataaa
caagagattttaattgttgctattggaaaccgtatccttaaaatcgacacaatgaaagct
ggaaaaggtgaaacctattctgcagaggagcctctcaaatgtaacattgataagttgatt
gacggggtgcaccttattggtaaacatgatgacaacatcactgagttgtcaatgtgccaa
tggatgaagagtcgattagcttcagcatcagcagatggcacggtgaagatatgggaagaa
cgtaaggcgacaccacttgctgttttaagaccacatgatggtaaacctgttaattctgtg
acgttcttgactgctccacaccgtccggatcacatcgttcttgtcacagcgggaccacta
aatcaggaagtgaagatatgggtatccggttacgaggaaggttggttattgcctagtgat
tccgagtcatggatttgtgttcaaactttggatataagaagttcttctgaagccaaccct
gatgaagcattctttaatcaagttgtagcgttgcctcgtgctggtttggttctgctagca
aatgccaagaaaaacacaatatatgctgtgcacatagaatatggacccaatccaactgct
actcgtatggattatatttccgagttcatagtcacaatgcctatattaagccttattgga
actagtgatagtttaccggatggagaccatcttgtgcagatatattgtgttcaaacacaa
gctattcaacagtacggactcaatttgtcacaatgtttgcctccgcctctagacaatatt
gaacttgaaaaaacagaaccgagtgtatcccgtgcttgggatggatctgctgatctggaa
actgttaacatgccacaagttcctttgagctcttctgaaagtgctgtgaatttgtcttct
tcaaatattcatggtccgcctgaagcttttgtatcagataataagatcaagccaaatgat
ttaccttctcataatagttttgaatatgtccacgctgctccacccccactccctccgagt
ccaagattgtctcgcaagttatctgcttccaaaagttcttctaatattttagcaaccagc
tcagctagcactggtgatcacaaaaatgagccagcaaatcttgatccctctgtagaagaa
agaataaaatctgaaaaagataatgtggcggatgtgcctgtatcgggcgacaatttgcaa
gaaagtgacaaagttgtacaaactgatgtttctgttgtttctgattcccctataacattt
aaacacccaacccatttggtaactccatccgagatattctctaaagctgccctatctcct
gctaattccaatatctctgaaggtgttgctgcacatagtgatgcagaaaagtttgaagta
gaagttaaagtggtagatgagattgagacaggttctaatcaagaaaacaccgagcatgac
agagacagaggctcacataccgatgccgctaagaagaaagagaagttattccattcccag
gcttcagatcttggcattcggatggccagagatgcctataatatcgagagagttcatcag
gctgataaagacacctataatactgagggagttcgtcaagctgatcgagacatctataat
atcgagggagatcttcaagctgataatactaatactattgatgcttctgaaaataatcgt
gcatcgattgagggagaagttcaagacacgagtaaggaggtacctgaaaacataagagaa
ccagaagttgtggctgcaactttgccgtccccagcaccttccacgaaaggtaaaaaacag
aaaggtaaaggttctcaagtgtctggtacacctgcttctcccagcccttttaactcagcg
gattcatcaaaggatcaaggtggaaatccagcaggctcgtccatggagtctgctttacca
caattatctactatacaagatatgatgggccagctattaaacatgcaaaaagaaatgcaa
aagcagatgaatgcaatggtttccgttccagttactaaggaaggcaaaagattagaaggg
tcattgggtcgaagcatggagaaggtagtgaaggctaacactgatgctttgtgggctcac
atacaagaagaaaatgctaagcaagagaaattagagcaagaccatgtgcagcaaataaca
aatttgatctccaattacataaacaaggatatgtcatctctattggagaaaatcattaag
aaggaaatatcttcaattggaacaaccattacccgttcacttagtcaaaatatggaaaaa
gcaatatcaacagctgttaccgagtcattccagaagggggtcggagacaaagcattgaat
caactagaaaagtcagttagttcaaaacttgaagctacagtggctaggcagatacaagca
caatttcaaactaccggcaagcaggctcttcaggaagcacttaagactagtgtggaagct
acattagttcctgcctttgagaagtcttgcagagttatgtttgagcaaattgatagcaca
tttcagaatggacttttgaaccacacaactgccattcaacagcagtatgattctactcat
tctccgctagctgcgactttgagggaaacgattaattcagcatcatcgctcactcaaact
ttgagtgggcaattagctgatggccaacgtaaactgttggaaatggcagctaattccaaa
gtggcttctgatccttttgtaacacaaatcaacaatggcttgcatgaaatgaccgaggat
cctaccaaagaactatcaaggttaacaagtgagggaaaatttgaggaagcatttaccgga
gcccttcatagaagtgacgtttcaatagtttcttggttatgttctcaggttgatttaagc
agtatcctgacaatggtgccactgccattaagccagggagtacttttatctcttctacaa
caattatcctgtgacatcaatacagatacaccgagaaaattgcaatggatgacagatgtg
gctgctgctataaacccagaagatactaggattgcagcgcatgtgcggccaatattggat
caagtgtaccgaacactaagccatcatcgtagtttaccatctaattccccttcagaagct
agcacaatccgccttctcatgcatgttataaactctgtgttaatgagctgtaaatga
DBGET
integrated database retrieval system
