Medicago truncatula (barrel medic): 11411289
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Entry
11411289 CDS
T01716
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB5
KO
K10845
TFIIH basal transcription factor complex TTD-A subunit
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03022
Basal transcription factors
mtr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
11411289
09124 Replication and repair
03420 Nucleotide excision repair
11411289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtr03021
]
11411289
03400 DNA repair and recombination proteins [BR:
mtr03400
]
11411289
Transcription machinery [BR:
mtr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
11411289
DNA repair and recombination proteins [BR:
mtr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
11411289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb5
Motif
Other DBs
NCBI-GeneID:
11411289
NCBI-ProteinID:
XP_024641047
LinkDB
All DBs
Position
5:25053189..25053697
Genome browser
AA seq
70 aa
AA seq
DB search
MVNATKGVFISCDIPMAQFIIKMNASFPTSDKFIIHILDSTHMFVQPHVEQMIRSQIAKF
REDNTYVKPS
NT seq
213 nt
NT seq
+upstream
nt +downstream
nt
atggtgaatgcaaccaaaggcgtctttatttcctgtgacataccaatggctcaatttatc
attaaaatgaatgcttcattccctacatccgacaaattcataatacatatattggatagt
actcacatgtttgttcaaccccatgtcgagcaaatgattcgaagtcaaattgctaagttt
cgagaggacaacacatatgtcaaaccttcttga
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