Medicago truncatula (barrel medic): 11412513
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Entry
11412513 CDS
T01716
Name
(RefSeq) probable ubiquitin conjugation factor E4 isoform X1
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr04120
Ubiquitin mediated proteolysis
mtr04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
11412513
04120 Ubiquitin mediated proteolysis
11412513
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mtr04121
]
11412513
Enzymes [BR:
mtr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
11412513
Ubiquitin system [BR:
mtr04121
]
Ubiquitin ligases (E3)
U-box type E3
11412513
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
11412513
NCBI-ProteinID:
XP_003618612
UniProt:
G7KLS4
LinkDB
All DBs
Position
6:complement(4239644..4248979)
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AA seq
1047 aa
AA seq
DB search
MATATATKPQRTPQEVEDIIIRKIFLVSITGESTTTTGATDSRIVYLELTAAEILSEGKD
LLLSRDVMERVLIDRLSGDFTVTGVESSTFHYLVGCYNRAHDESKKIVNMKDKNLRSEIE
TVIKQAKKLCVSYCRIHLANPELFSGARDSNFSASGTGAGASRSPLLPLIISECGGGGGM
GVFGGETRIAGVKSPPGFLDEFFRDSDFETLDKILKGLYEELRGSVMKVSVLGNFQDSLR
VLLFLVRLPIGAKSLVSHEWWIPKGVYMNGRAIEMTSILGPFFHVSALPDQNFFKSSPDI
GQQCFSDASTRRPADLLSSFTTIKTVMNTLYDGLSEALRILLKSTDTRENVLEYLAEVIN
LNASRAQMQVDPITSASSGMFVSLSAVMLRLCEPFLDANLTKRDKIDAKYVHHSNRLNLS
GLTALHASSEEVAEWLKSKNPATAVDINQYNDGGKRLQESQEASSSGSNNASPKYSFICE
CFFMTARVLNLGLLKAFSDYKHLAQDISRSEDTLSTLKTMQEQSPSPQLALDITRLEKEL
ELYSQEKLCYEAQILRDNTLIQNALSFYRLMIVWLVGLVGGFKMPLPNPCPMEFSTMPEH
FVEDALELLIFASRIPKALDGVVLDEFMNFIIMFMGSPDFIKNPYLRAKMVEVLNNWMPR
RSGSSATSTLFEGHQLSLQYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWN
VPSHRSAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWER
RPVQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTTEQITAPFLLPEMVDRVASMLNY
FLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHVYVHLARGDTNSIFPSAISKDGRSYN
DQLFSSAADVLRRIGEDGRIIQEFIQLGAKAKVAASEAMEAEDTLGEIPDEFLDPIQYTL
MKDPVILPSSRITVDRPVIQRHLLSDSSDPFNRSHLTADMLIPDVELKAKIEEFIRSQEM
KKHGESINIQSSKATIQTTDTSEMLID
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcgacggcgacaaaacctcaacgaactccacaggaagtagaagacataatc
atccgcaaaatcttcctcgtcagcatcaccggagaatcaacaaccaccaccggagcaacc
gattcgagaatcgtttatctcgaactaaccgccgcagagattctcagtgaaggaaaagac
cttctcctatctcgcgatgtaatggaaagagttctcatcgatcgtctctccggcgatttc
actgtcaccggagtagaatcctcaacgtttcattatctagtcggttgttacaatcgcgct
catgatgaatcgaagaaaatcgttaacatgaaagataagaatcttaggtcagaaatcgaa
accgtgattaaacaagcgaagaaactttgtgtttcgtattgtaggattcatcttgcgaat
cccgagctttttagtggagctcgggattcaaatttcagcgccagtggaactggcgctgga
gcatcgcgatcgccgttactgcctctgattatatcagagtgcggtggtggcggtggaatg
ggggtatttgggggtgaaacaagaattgctggagtgaagagtccaccggggtttttggat
gagttttttagggatagtgattttgaaactttggataaaattttgaaagggttgtacgag
gaattgagagggagtgtgatgaaggtatctgtgcttgggaattttcaggattcgcttagg
gttttgttgtttttggttaggttacctattggtgcaaagagtcttgttagtcatgaatgg
tggattcctaaaggtgtttatatgaatggtcgtgctatcgaaatgactagcattttgggt
cctttttttcatgttagtgctcttcctgatcaaaacttcttcaagagttcgccggatatt
gggcagcagtgcttttctgatgcgtcaactcggcgaccagctgatttactatcttcattc
accaccatcaaaactgtcatgaacaccttatatgatggcctatccgaagcactccgcatc
cttcttaaaagtacagatactcgtgaaaatgtacttgagtatcttgcagaggtgatcaat
ttaaatgcttctagggctcagatgcaggttgacccaattacttctgcaagttcaggcatg
tttgtaagtctcagtgctgtcatgcttcgcctctgcgaaccatttttagatgcaaattta
actaaaagggataaaattgatgctaaatatgtacaccactcaaatcgtttgaatctaagt
gggttaactgcccttcatgcgtcatcagaagaagttgctgagtggcttaaaagtaaaaac
ccagctacggcagtggatattaatcaatataatgatggtgggaaacgtctgcaagaatct
caagaggccagtagttctggcagtaataatgccagtccaaaatactcatttatatgtgaa
tgcttctttatgactgcaagagtgctcaacttggggcttttaaaagcattttctgactac
aaacacttagctcaggatatttctagaagcgaagatactctttccacacttaaaaccatg
caggagcagtcaccttctccccaattggcattggatataactcgacttgagaaagaactg
gagttgtattcgcaagagaagctttgctatgaagctcagatattgagggataacactctt
attcagaatgcactttccttctaccgcttgatgatcgtctggttggttggcttggtaggt
ggatttaagatgccactaccaaacccatgccctatggaattttccaccatgcctgaacat
tttgtagaagatgccctggaacttctaatttttgcttcccggattccaaaggccttagat
ggagtagtgctggacgagtttatgaacttcataattatgttcatgggcagccccgacttt
atcaaaaacccatacctgagagccaagatggtcgaagttctgaataactggatgcctcgt
aggagcggctcatctgctacatctactttatttgaagggcaccaactgtctcttcagtat
cttgtgaggaatcttctgaaactttatgtcgacattgagttcactggttctcacacacag
ttctacgataagtttaacatccgtcataatattgctgagctccttgaatacctgtggaat
gtccctagtcatcgcagtgcttggagacagattgctaaagaggaggaaaagggcgtctat
ctcaatttcttgaattttctgattaatgatagtatctatcttcttgacgaaagtctgaac
aaaattcttgagctaaaagaattggaggctgagatgtcgaatactgctgaatgggagcga
cgaccagttcaagagaggcaggaaaggacccggttattccactctcaagaaaatattatt
cggatagatatgaaattggccaatgaagatgtcagtatgcttgcattcactacagagcag
attactgctccattcctgcttcccgagatggttgatagagtggctagcatgctcaattac
tttctgctgcaattggtgggtccccaaagaaaatcactcagtctgaaagatcccgaaaaa
tatgaatttcgtccaaagcatttgcttaaacagattgtgcatgtatatgttcatcttgcc
agaggtgacacaaattccatcttcccatctgccatctcaaaggatggccgatcatacaat
gatcagttgtttagctcagctgcggatgtccttcgtagaattggggaggatggaagaatt
attcaggaatttattcagctcggtgctaaagccaaagttgctgcttcagaggccatggaa
gctgaagatacactaggagaaataccagatgaattcctcgatccaattcaatacactttg
atgaaggatccagttatcttgccttcctcaagaatcacggttgatcgtcctgtcatccag
aggcatcttcttagtgacagcagtgacccattcaaccgttctcatcttaccgccgatatg
ctgattcctgatgttgaacttaaagcaaaaattgaagagtttattaggtctcaggaaatg
aagaaacatggtgaaagcataaacatacaaagttctaaagccaccattcaaaccacagat
acttctgaaatgttgattgattag
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