Medicago truncatula (barrel medic): 11413944
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Entry
11413944 CDS
T01716
Name
(RefSeq) sister chromatid cohesion protein SCC2
KO
K06672
cohesin loading factor subunit SCC2
Organism
mtr
Medicago truncatula (barrel medic)
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mtr03036
]
11413944
Chromosome and associated proteins [BR:
mtr03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
11413944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
PHD
PHD_2
C1_1
zf-RING_15
Motif
Other DBs
NCBI-GeneID:
11413944
NCBI-ProteinID:
XP_003618719
UniProt:
G7KMP7
LinkDB
All DBs
Position
6:complement(4809216..4826391)
Genome browser
AA seq
1809 aa
AA seq
DB search
MIPPITSDAVTAAEALTDHRGISMANTVHSEVASCLPLPSLPVFCGASDHNLRLFDSPLP
LNRVEILSQSSKIAEMLRNTDVSYLNLRDDAKTVPYNYAEPLELHDEVLRCNPEAFECSH
EGPVKEKISGSALPETKLSEASFSVPSQTQKDYSATPSRQLDNVYTNDISTLSSKKSKLK
KKGGNGISIEPDPAALQDASIRRFCEFLEDLCRKSELNSDDRDEAAEWLPLPLSDLRLLV
NEIMSTREKKLLHLVPVELLVRLLKVLDHQIHISEGLSIEDCDNSNSELVSSLLVALESI
HAALAVMAHTDMPKQLYKEEVIERILEFSRHQIMDVMCACDPSYRALYRPSENTAHEVDD
EENDAEFGPASKKRRTTSKTVKLKKSASSRFSSAVNVILQKLCTVLGLLKDLLLIERLSD
SCILQLVKTSITTFLVDNIQLLQLKAIGLLSAIFYLYTQHRTYVLDEMLHLLWKLPHSKR
ALRNYHIREEEQRQIQMITALLIQLIHCSANLPDNLRQASSGNSVLEVSFDASYPTKCRD
AVTEACCLFWRSVLERLASVKTQDASELKSIMENLVMDLLNTLNLPEYPASASILEVLCA
ILLQNAGSNSKDFASRSMAIDILGTIAARLKRDAVICSQEKFWVLQDLLSEDAAPQHYPK
DTCCVCLGGRVENLFKCSGCDRLFHADCLDVKENEVPNRNWYCLMCICSKQLLVLQSYCN
SQRKDDAKKNRKVSKDDSTFSNHEIVQQLLLNYFQDVTSADDLHHFICWFYLCSWYKNDP
KCQQKPIYYFARMKSRTIVRDSGSVSSMLTRDSIKKITLALGQNSSFCRGFDKIFHTLLV
SLKENSPVIRAKALRAVSIIVEADPEVLGDKFVQSSVEGRFCDTAISVREAALELVGRHI
ASHPDVGFKYFEKITERIKDTGVSVRKRAIKIIRDMCCSDGNFSGFTRACTEIISRVTDD
ESSIQDLVCKTFYEFWFEEPSTPQTQVFKDGSTVPLEVAKKTEQIVEMLKRLPNNQLLVT
VIKRCLTLDFLPQSAKASGVNPVSLVTVRKRCELMCKCLLEKILQVDEMNSNELEKHALP
YVLVLHAFCLVDPTLCAPASNPSQFVLTLQPYLKTQVDNSMVTQLLESIIFIIDSVLPLL
RKLPPSIVEELEQDLKQMILRHSFLAVVHACIKCLCSMSELAGKGAAVIEHLIQVFFKCL
DTEAVVNKQLVGRSLFCLGLLIRYGNCLLASSGNKLVDVKRSLNLFMKYLAGEDYALKAR
SLQALGYVLIARPEYMLENDIGKILEGTLSSIADDRLKIQALQNMFEYLLDAESKMETEE
VDGKVPGHSVRAGQSVPVAAGAGDTNICGGIIQLYWNNILGRCVDFNTQVRQSALKIVEV
VLRQGLVHPITCVPYLIALETDPLESNSKMAHHLLMNMHEKYPAFFESCLGDGLQMSFMF
MQSIFVSPDENVNHKSQSKIAVSGKGKPEADSLAQSRVGVSRIYKLIRGNRISRNKFMSS
IVRKFDNPKWNKFVIAFLTYCTEVLALLPFVAPDEPLYLIYTINRVVQVRAGPLEANFKA
WSSSLLQSEGQGTPHGNGMYQRATDETIHSTQGQSMDLNGPFQQNVDVQPYVDDMTSVDL
NGTNHQLPDYPLSHNGRLKVKPQAAGFADSFTFSKDDLEKVQADCLSAIALQLLLKLKRH
LKIMYSLDDARCQAYSPSEPPKPGDVFSRQSIPFNIGESQFSLPTSPQELIQRYQEFKNA
LKEDTVDYSLYTANIKRKRPTQTPRKVRKSGPPMVGGDNDEDDDEDWAGGSRNISFSGGR
RSSLRNSRQ
NT seq
5430 nt
NT seq
+upstream
nt +downstream
nt
atgattcctccaataacttccgacgccgttacggcggcggaggcactcaccgaccaccgc
ggaatcagcatggcgaacacagttcattccgaagtcgcttcgtgcttgccgttaccttcg
cttccggttttctgcggtgcttccgatcataacctacgtctcttcgattcaccgttgccg
ttgaaccgcgttgagattctctcgcaatctagcaaaatcgccgaaatgctccgtaacact
gatgtttcgtacttgaatttaagagacgatgccaaaactgttccgtataactacgccgag
cctttagaactccacgatgaggttctcaggtgcaatcctgaagcatttgaatgcagtcat
gaaggtcccgtcaaggagaagatctctggtagtgcattacctgaaacaaagctctctgaa
gcaagtttttctgtcccaagtcagactcaaaaagactatagtgcaactcctagccgacag
cttgataatgtttatacaaatgacatttctacactgtcttctaagaaatcaaaacttaag
aagaaaggtggcaatggaatatctattgaacctgaccctgccgctcttcaagatgccagc
atcagaaggttttgtgagtttttggaggacttatgtaggaagtctgaattgaacagtgat
gatcgagatgaagcagcagagtggttgccattgcctctttcagatcttagattgcttgtt
aatgaaataatgtctacacgtgagaaaaaacttctgcatttggtccctgtagaattactt
gttagactgctaaaggttttagatcatcagatacatatatctgaaggcctgtcaattgag
gattgtgacaattccaattcagaactagtttcgtctcttttagttgcgttggaatccatt
catgccgcactggcggtgatggctcacactgacatgccaaagcaactttataaagaagag
gtcattgagagaattctggagttttccaggcatcagattatggatgtgatgtgtgcgtgt
gatccatcataccgtgcgttatacagacctagtgaaaacactgcccatgaagttgatgat
gaggaaaatgatgctgaatttggtccagcaagcaaaaaacgacgaactaccagcaagacc
gtgaagttgaagaaatcggcatcaagcaggttctctagtgctgtgaatgttattcttcag
aagttgtgtactgttcttggactactcaaggatttgttgttaatagagaggttgtcagat
agttgtattttacaactggtaaaaacaagcattacaacattcttggttgataacatccag
ctcttgcaattgaaggcaattggtttactcagtgcgatattctatttatacacacaacat
cgcacttatgtgttagatgaaatgcttcatcttctttggaaattaccgcattcaaagcga
gctttaaggaattatcacatacgcgaggaagagcaaagacagatccaaatgattactgct
ttgctaatccaattaattcactgtagtgctaaccttcctgataatttaagacaagcatca
agtggtaactctgttttagaagtctcattcgatgcaagttatccaactaaatgccgtgac
gcagtaacagaggcctgctgtctattttggagaagtgtacttgagcgacttgcaagtgta
aagactcaggatgcttctgaattgaaatccataatggagaaccttgttatggatttactg
aacactctaaacttacccgaatatcctgcttcagcttctattttagaggttctatgtgct
atactacttcagaatgctgggtcaaactccaaggatttcgcttcacgttccatggcaatt
gacattctcggcactattgctgcaaggttgaagcgtgatgctgtgatctgtagccaggaa
aagttctgggtacttcaggatttacttagtgaggatgctgctcctcagcattatccaaaa
gatacatgctgtgtctgtttgggaggaagggttgaaaatttgttcaaatgttcgggctgt
gataggctttttcatgctgattgcctggatgttaaagaaaatgaagttcccaaccggaac
tggtactgtcttatgtgcatctgctcaaagcaactgcttgtattacaatcatattgcaat
tcccagcgcaaggatgatgcaaaaaagaatcgtaaagtgtcaaaggatgattctacattt
tctaaccatgagattgttcaacaactgcttttgaattactttcaagatgtcacctctgct
gatgacctacatcatttcatttgctggttttatctctgctcatggtataaaaatgatcca
aaatgtcagcagaagcccatttactattttgctaggatgaaatcgagaaccatagtacgg
gattctggttctgtttcttctatgctgacgcgagattcaatcaagaagataactctagct
ttaggccaaaacagttcattttgtcgggggtttgataagatttttcacacgcttttggta
agtttgaaggagaattctccagttattagggctaaagctttacgagcagttagtatcatt
gtagaggctgatccagaggtattgggtgataaatttgtacaatcatccgtcgaaggtagg
ttctgtgacactgcaatatctgttagagaagcagcattggaactcgttggtaggcatatt
gcttcacatccagatgtgggttttaagtattttgagaagattaccgagagaatcaaagat
actggagtgagtgttcgaaaacgagctataaaaattatccgagatatgtgctgctcagat
ggcaacttctcagggtttacaagagcctgcacagagataatttcacgtgttactgatgat
gaatcgagtatccaggatcttgtttgcaaaacattttatgagttctggtttgaggagcct
tctactccacaaactcaggtctttaaagatggtagtactgttccacttgaggtagctaag
aaaacagagcaaattgtggaaatgttgaagagattgcccaataaccagcttcttgtaact
gtaataaagcgctgcttgacacttgattttttaccgcaatctgcaaaagcaagtggggtc
aacccagtgtctcttgtaacagtgcgtaaacgttgtgagttgatgtgcaaatgcttgctg
gagaagatattgcaggttgacgaaatgaacagtaatgaattggaaaagcatgcacttccg
tatgtgctagtcttgcatgcattttgtcttgtggacccaacgctctgtgcaccagcctct
aacccttcccagtttgtccttactttgcagccatatctgaagactcaggttgacaatagc
atggtcacacagctacttgagagtataatatttataattgattctgtgttgccgttgctg
cgtaagttgcctccgagtattgtggaggaactcgaacaggatttgaagcagatgattctc
cgacattctttcttggcagttgtccatgcttgtatcaagtgcctctgcagtatgagtgag
ctggctggaaagggggctgctgtaattgagcatcttattcaggtcttcttcaaatgtttg
gacaccgaggcagttgtaaacaagcagctagtcgggcgatctctcttctgtcttggtttg
cttattcgttatggcaactgtttgttagcaagctctggtaacaagcttgttgatgtcaag
aggagtctcaacttgtttatgaaatatcttgctggggaggattatgctctcaaggctaga
tcattgcaggcactaggttatgttctaattgcaaggcctgaatatatgttagaaaatgac
attggcaagatactggagggaacattgtcttctattgctgatgatcggcttaagattcaa
gcactgcaaaacatgtttgaatatcttcttgatgctgaaagcaaaatggaaacagaggaa
gttgatggaaaagtacccggtcactcggttagagctgggcagagtgtgcctgttgcagct
ggagctggggatacaaacatatgcgggggtataattcagttgtactggaataatattcta
ggcagatgtgttgatttcaatacacaagttcgacaatcagccttgaagattgttgaagtt
gtgctgcgtcaaggtcttgttcatcccatcacgtgtgttccatatcttatagcacttgaa
acagatcctctggagtcaaattcaaagatggctcatcatctcctaatgaatatgcatgaa
aagtaccctgcattttttgaaagctgcttgggtgatggacttcaaatgtctttcatgttc
atgcaatctatttttgttagtcctgatgaaaatgttaaccataagtctcaatctaagatc
gctgtttctggaaaagggaaacctgaggctgactcgctcgctcaatcaagagttggggtt
tctcgaatatacaagctcatccgagggaatcggatatcaaggaacaaatttatgtcctca
attgtgcgaaaatttgataatccaaaatggaacaaatttgtaatagctttcttaacgtac
tgcacagaggtccttgccttgcttccattcgttgcacctgacgaacctctttatttaatc
tatactatcaatcgagtagttcaggttagggctggtccactggaggcgaatttcaaagcc
tggagttcaagtttattacaaagtgagggtcagggtacacctcatgggaatggaatgtat
caacgggccacagatgaaactattcattcaacccaaggtcagtcgatggacttaaatggt
ccatttcagcaaaatgtagatgttcagccctacgtcgatgatatgacatcagtggattta
aatggaacaaatcaccaattgccagattatcctttatcacataatggtagattgaaagta
aagccacaagctgcaggttttgcagattcctttaccttctcaaaagatgatctggagaaa
gttcaggctgactgtttatctgcgattgcgttgcaacttcttttaaagttaaagagacac
ctaaaaatcatgtatagtctcgatgatgctagatgtcaggcttattctcccagtgaacca
ccaaaacctggtgatgtgttctcaagacagagtattccctttaatattggtgaatctcag
ttcagtttgcctacaagtcctcaagaattaatacaaagatatcaggagtttaagaatgca
ttgaaggaagacacagtggattattcactctacacagcaaatataaaacggaagagacca
acacaaacacccagaaaagttcggaaatcaggaccaccgatggtaggtggtgataacgat
gaggacgacgatgaggattgggctggtggatcgcgcaacataagttttagtggtggccgc
aggtcaagccttagaaactccagacaatag
DBGET
integrated database retrieval system
