KEGG   Medicago truncatula (barrel medic): 11414050
Entry
11414050          CDS       T01716                                 
Name
(RefSeq) histone deacetylase 6
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03082  ATP-dependent chromatin remodeling
mtr03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    11414050
   03083 Polycomb repressive complex
    11414050
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:mtr03036]
    11414050
Enzymes [BR:mtr01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     11414050
Chromosome and associated proteins [BR:mtr03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     11414050
   HDAC complexes
    Sin3A-HDAC complex
     11414050
    BRAF-HDAC complex
     11414050
    REST complex
     11414050
    SHIP complex
     11414050
    MiDAC complex
     11414050
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     11414050
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    11414050
  Chromatin remodeling factors
   NuRD complex
    11414050
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 11414050
NCBI-ProteinID: XP_003601202
UniProt: G7J4T5
LinkDB
Position
3:38127149..38133283
AA seq 476 aa
MGSGEMGVAESGGASLPSIGADAMKRRVTYFYEPSIGDYYYGQGHPMKPHRIRMAHNLII
HYSLHRRMQINRPFAAAPEDIRRFHSDDYVEFLSSVSPEIVSDNSHSHYRQLKRFNVGED
CPVFDGLFPFCQASAGGSIGAAVRLNRGDADIAINWAGGLHHAKKAEASGFCYVNDIVLG
ILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDTGVGPG
KDYALNVPLNDGMDDENFRALFRPIMQKVMDVYQPDAVVLQCGADSLSGDRLGCFNLSVK
GHADCLRFLRSFNVPLMVLGGGGYTVRNVARCWCYETAVAVGVEPSNKLPYNEYYEYFGP
DYTLHVEPNNMENLNTPKDMEKIRNTLLEQIARLPHAPSAPFQTTPSTAEVPEVEEEDMD
IRPKRQLWSGEDYDSDPDEDEKANIRSSSLTSHMRRAADMMEEDKPEVKPGVHPPC
NT seq 1431 nt   +upstreamnt  +downstreamnt
atgggcagcggcgaaatgggtgtagctgagagcggtggcgcatcacttccttcaatcggc
gccgacgcaatgaagcgtcgcgtaacctacttctacgaaccaagcatcggtgattattac
tacggtcaaggtcacccaatgaaaccccatcgtatccgcatggcacacaatctcatcatc
cactactctctccaccgtcgtatgcaaattaaccgtcctttcgccgctgcgccggaagat
atccgccggtttcactctgatgattacgtcgagttcctctcttccgtttcgccggagatt
gtttcggataattcacactctcattatcggcagttgaagaggtttaacgtaggtgaggat
tgtcctgttttcgacgggctttttccgttctgccaggcttctgctggtggatctattggt
gctgctgttaggcttaatcgtggtgacgctgatattgctattaattgggctggtgggttg
catcatgctaagaaagctgaagcttctgggttttgttatgttaatgacattgttcttggg
attcttgagcttctcaaagttcataggcgtgttctgtatgttgatattgatgtccaccac
ggagatggcgttgaggaggcattttacactactgatcgagtgatgactgtgtcttttcat
aagtttggtgatttcttccctggaactgggcatattaaagacactggtgtgggccctggg
aaggactatgctctaaatgttccattgaatgatggaatggatgatgagaatttccgtgct
ctgtttcgtcccattatgcaaaaagtcatggatgtttatcaacctgatgcagttgttctt
caatgtggagctgattctttgtccggtgacaggttgggttgcttcaacttatctgtgaag
ggtcatgcagactgccttcgtttccttaggtcttttaatgttcctctaatggtcttgggt
gggggaggatacactgtacggaatgttgctcgctgttggtgttatgagacagccgtagca
gtaggagtggagcctagtaacaagttgccatataatgagtattatgaatattttggccca
gactatacacttcatgtcgaaccaaacaacatggagaacctaaacacacccaaggatatg
gaaaaaatcaggaacactttgcttgaacaaattgccagacttcctcatgctcccagtgct
ccttttcagacaacaccatcaaccgcagaagttcctgaagtggaagaagaggacatggat
ataagaccaaaacgtcagttgtggagtggtgaagattatgattctgatcccgatgaagat
gagaaggccaatataaggagctcaagtttaacttctcatatgaggcgcgcagcagatatg
atggaagaagataagccagaagttaagcctggtgtgcatccgccatgctaa

DBGET integrated database retrieval system