KEGG   Medicago truncatula (barrel medic): 11414806
Entry
11414806          CDS       T01716                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03030  DNA replication
mtr03410  Base excision repair
mtr03420  Nucleotide excision repair
mtr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    11414806
   03410 Base excision repair
    11414806
   03420 Nucleotide excision repair
    11414806
   03430 Mismatch repair
    11414806
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mtr03032]
    11414806
   03036 Chromosome and associated proteins [BR:mtr03036]
    11414806
   03400 DNA repair and recombination proteins [BR:mtr03400]
    11414806
DNA replication proteins [BR:mtr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    11414806
  DNA Replication Termination Factors
   ELG1-RFC complex
    11414806
Chromosome and associated proteins [BR:mtr03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    11414806
DNA repair and recombination proteins [BR:mtr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     11414806
  Check point factors
   HRAD17(Rad24)-RFC complex
    11414806
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 Rad17 AAA_16 RuvB_N ADK Mg_chelatase AAA_24 AAA_5 AAA_11 AAA_14 SLFN-g3_helicase ResIII AAA_2 AAA_assoc_2 nSTAND3 AAA_28 PhoH AAA_19 AAA_30 AAA_25 AAA_7 NPHP3_N RNA_helicase AAA_18 ATPase_2 TIP49 Parvo_NS1 DUF815 Effector_1 NB-ARC IstB_IS21
Other DBs
NCBI-GeneID: 11414806
NCBI-ProteinID: XP_024633679
LinkDB
Position
3:complement(43605843..43610571)
AA seq 339 aa
MAPIIQSTQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNKPKNGYPCPPYKIIV
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMS
SRIVYICKEEGIYLDAEGLSTLSNISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIV
PAEVVEALLKACRSGNFDLANKEVNNFIAEGYPVSQMLTQLFEAIVEENDISDEQKARIS
KKLGEADKCLVDGADEYLQLLDVVSNTIQALCNMPEGFA
NT seq 1020 nt   +upstreamnt  +downstreamnt
atggcgccaatcattcagagcactcaaccatgggtcgagaaataccgtccaaagcaagtg
aaagacgtagctcaccaagaagaagtggttcgagtactcaccaacactctcgaaactgga
agctgcccacacatgctcttctatggtcctcccggcactggaaaaaccactactgccctc
gctatcgctcatcagcttttcggacctgaactctataaatctagggttttggaacttaat
gctagtgatgatcgtggtattaatgttgttcggactaagatcaaagatttcgctgctgtc
gctgtgggtaccaataagcctaagaatggttatccgtgtccaccgtataagatcattgtt
ctcgacgaggctgattcaatgacagaagatgctcagaatgcactgaggcgaacgatggaa
acttattctaaagttactaggttcttttttatatgcaactacattagcaggattatagaa
ccacttgcttcaaggtgtgcaaaattcaggttcaagccactgacagaagaaatcatgagc
agccgaatagtatacatctgcaaagaagaaggaatctaccttgatgctgagggtctttca
actttaagtaatatttctcaaggagatctccgtcgggctataacatacttgcagtctgct
gctcgcttatttggatcttccatttcttccaaggatctgatttctgtgtctgggattgtt
ccagcggaggttgttgaggcacttcttaaagcatgcagaagtggtaattttgatttagca
aacaaggaagtcaacaatttcattgcagaggggtatcctgtctctcagatgctaactcag
ttgtttgaggctattgttgaagaaaacgacatatcagatgagcagaaggcaaggatatcc
aagaagttgggtgaagcagataagtgcctagttgatggtgctgatgaatacttgcagctt
cttgatgtggtcagcaatacaatacaagctttatgtaacatgccagaaggatttgcttaa

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