Medicago truncatula (barrel medic): 11415010
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Entry
11415010 CDS
T01716
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
11415010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mtr03041
]
11415010
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
11415010
Spliceosome [BR:
mtr03041
]
Complex C
Other components
Step II factors
11415010
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RBD_DEAH11
RRM_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
KH_DEAH11
Helicase_C
OB_NTP_bind
IBR
DEAD
AAA_22
AAA_19
ResIII
NAT10_TcmA_helicase
zf-C3HC4
Rcat_RNF216
AAA_29
AAA_30
ABC_tran
Arc_MA
nSTAND_NTPase5
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
11415010
NCBI-ProteinID:
XP_024634212
LinkDB
All DBs
Position
3:complement(42764055..42770844)
Genome browser
AA seq
1731 aa
AA seq
DB search
MKKTFSTNHTPHFHRQTPHSACPVYRHRRPGFYSNHRFDRPPERNPPHRPPNFILKLHLG
RRALNRDDVDSLIGKCKPNPDNYCFYPCDGVAASLNFLQWTDARDAVVWFWESRISGGHD
FTPELISNVMVPSDTVELEGSLRRVFASHVKELMEGKEVKKWVEEWDRVSKEISRVVSLL
GKPFPIRVQEQNIQMKKGLDEEKSLIERRLKEFEFAMECILQHLEEDSKVDSGDDFVPVF
RFGGGFDWGKIHSLIVRERRRLEEGLPIYAYRREILQQIHHQQITVLIGETGSGKSTQIV
QFLADSGIGADETIVCTQPRKIAAKSLAERVQEESKGCYEENSIQCYSTFSSCQKFDDSR
IAFMTDHCLLQQYMSDRNLSGVSCIIVDEAHERSLNTDLLLALIKNLLCKRVEMRLIIMS
ATADAKQLSDYFYGCGIFHVLGRNFPVEVRYVPSEYGEHSGSAVLAPYVFDVVKLATEIH
KTEKEGAILAFLTSQVEVEWACENFKALSAVALPLHGKLSSEEQFHVFQKYPGKRKVIFS
TNLAETSITIPGVKYVIDSGLVKDCRFDPCTGMNVLKVCWISQSSANQRAGRAGRTEPGR
CYRMYSEADYRSMELNQEPEIRRVHLGVAVLKILALGVKNVQDFDFVDAPSPSSIEMAIR
NLIQLGFIKLNNNVHELTYEGRYLARMGIEPRHGKLILGCFRLGLGREGIVLAATMPNAS
NIFCRFGNEGDKQRSDCLKVQFCHPDGDLFTLLSVYKEWEAQPRDRRNKWCWENSINAKC
MRRCQDTVLELESFLEREHGFVVPSYWRWNPHTPSVHDKNLKKVILSSLAENVAMFSGRN
QLYEVAQTGQHVQLHPSSSLLVFAQRPSWVVFGELLSVSNEYLVCVSAVDFQLLYSLQPP
PLFDVSKMEERKLQTKTLTGFGTILLKRFCGKGNGNMFGLASRIRKACMDERIFVEVNID
ENLIQLYATSHDMNTASMMVNDVLEYEKKRLRTECMEKCLYHGSGSSSPIALFGSGAEIK
HLELEKHSLSVDVCHPNINEINDKELLMFLEKNTSGCICAVYKFPGMVKDVEDREKWGKI
TFSSPDAAKRAAELDGEEFCGSSLKILPSHSVIGGDKTFSFPEVKAKIYWPRRFSKGFGI
VKCDKNDVDFILRDFYNLAIGGRYVRSALSNKSMDSIVISGLDKELLETEILDVLRTATS
RRILDFFLVRGDAVGNPSCSACEESLFKEISPLIPKINPHISSCRVQVFPPEPKDSFMRA
LINFDGRLHLEAAKALEKIEGKVLPGCLSWQKIKCEQLFHSSLIFPAPVYHVIAEQLEKI
LTSFNNLKGLEWNLNRTANGSHRLKITANATKTVAEVRRPLEELSRGKVIDHDSITPAAL
QLMLSRDGFNLKSSIQQETRTYIIFDRQNLNLRIFGSPNRIALAQQKLIQSLLSLHEKKQ
LVISLRGKDLPSDLMKQVVKNFGPDLHGLKEKVPGADLELNTRQQIIFLHGNKELKPRVE
EITLEIARSSHHLVERLDTGPSCPICLCEVEDGYKLEGCGHLFCRLCLVEQCESAIKNQG
SFPICCAHQGCGDPILLTDFRTLLSNDKLDELFRASLGAFVASSSGTYRFCPSPDCPSVY
RVADSDTASEPFVCGACYSETCTKCHLEYHPYLSCERYRELKDDPDSSLKEWCKGKEQVK
SCFACGQIIEKIDGCNHVECKCGKHVCWVCLEIFTSSDECYDHLRTIHMTI
NT seq
5196 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaactttttctaccaaccacaccccccatttccaccgtcaaacccctcactcc
gcctgccccgtttaccgtcaccggagacctggattttactccaaccaccgtttcgaccgc
cctccggagcgaaatccacctcaccgtcctcccaatttcatcctcaagctccacctcggc
cgtcgtgcactcaaccgcgacgatgtcgactctttgatcggtaaatgtaaacccaaccct
gataattattgtttctacccctgcgacggtgttgctgcgtcgctcaattttctgcaatgg
acggatgctcgtgatgctgttgtttggttctgggaatcgaggatttctggaggtcatgat
tttacgccggagttgatttcgaatgttatggttccttctgatactgttgaactggaaggg
agtctcagaagggtttttgcaagccatgtgaaggagttgatggaagggaaggaagtgaag
aagtgggtggaggagtgggatcgtgtatcaaaggagatttcgcgtgttgtgagtttgttg
ggtaagccttttccgattagagtgcaggagcagaatattcagatgaagaaagggcttgat
gaggaaaagagtttgattgagaggagattgaaggagttcgagtttgctatggagtgtatt
ctgcagcatttggaagaggatagtaaggtggacagtggtgatgattttgttcccgtgttt
aggtttggtggaggttttgattgggggaagattcatagcctcatcgttagagaacggcgt
agactcgaagaaggattacccatttatgcttaccggagggagattcttcaacaaattcat
catcaacagataacagtgttgattggagagactggttctgggaagagtactcagatagta
cagtttctcgcggattctggcattggggctgatgagacaattgtgtgcactcagcctcgc
aaaattgctgccaagtcattggctgaaagggttcaggaagaaagtaaagggtgttatgaa
gaaaattcgatccagtgttattcgacattttcatcctgccagaaatttgatgattccagg
atagcattcatgaccgatcactgtttattgcagcagtacatgagtgataggaatttgtca
ggggtctcgtgtatcatagttgatgaggcacatgaaaggagcttaaatactgatctactg
ttggcgttgattaagaatttactttgtaagagggttgaaatgcgacttatcatcatgtct
gctactgccgatgctaagcagctatctgattatttctatggctgtggaatattccatgtg
cttgggagaaacttccctgtggaggtgaggtacgttccttctgaatatggagaacattct
ggttctgctgttttggccccatatgtttttgatgttgtcaaactggcaaccgagattcac
aaaacagagaaagaaggagctattcttgcctttctgacctcacaggtagaagtagaatgg
gcctgcgaaaactttaaagccctatctgccgtcgctctgcccttgcatgggaaactttcg
tccgaagagcaatttcatgttttccagaaataccctggaaaaagaaaagtgatattttcg
acgaatcttgcagagacatcaattacaattcctggtgttaagtatgtgattgattctggg
ttggttaaagattgccgatttgatccttgcactgggatgaatgtacttaaggtttgctgg
atcagccagagctctgctaatcaaagggctggtcgtgctgggaggaccgagcctggcaga
tgctataggatgtactcagaagctgattataggtctatggaactaaatcaagaacctgag
attcgaagagttcatcttggtgtagcagttttgaagatccttgctctaggggtgaagaat
gtgcaggattttgattttgtggatgctccaagccccagctctattgagatggcaatcagg
aatctaattcaattaggattcattaaactgaacaacaatgttcatgagctaacttatgaa
ggtaggtacttggcaagaatggggattgaacctaggcatggtaaacttattcttggctgt
ttccgactaggtttgggtagagaaggcattgtccttgctgccacgatgcccaatgctagt
aacatattttgcagatttggtaatgaaggtgacaaacaaagatctgattgtctcaaagtg
caattttgccatcctgatggtgacctttttactcttctctcggtatacaaggaatgggaa
gctcagcctcgagataggaggaataaatggtgttgggaaaacagcatcaatgccaaatgt
atgaggagatgccaagacacagttttggagttagaatctttcctagagcgtgaacatggc
tttgttgttccaagttactggcgttggaaccctcatacgccttctgttcatgataagaat
ttgaaaaaggttatactgtcctcacttgctgaaaatgtagccatgttctctggacgcaat
caactttatgaagtagcccaaactggacaacatgttcaacttcatccatcttcatccttg
cttgtatttgctcagcggcctagttgggtagtttttggtgagcttctctcagtgtctaat
gaatatttggtctgtgtgagtgctgttgactttcaattattatacagccttcaacctcct
cccttgtttgatgtatccaagatggaagagaggaagttacaaacgaagacattgactggt
tttggaactattcttctcaagagattttgtgggaaaggcaacggtaatatgtttggtctt
gcttcacgtattaggaaagcttgtatggatgaaagaatctttgttgaagtaaatattgac
gagaatctcatccagttatatgccacttcacatgatatgaatacagctagtatgatggtg
aatgatgttttagaatatgagaaaaagaggttacgcactgaatgtatggaaaaatgtttg
tatcatgggtcaggttcctcatcacctatagcattgtttgggtctggtgctgagataaag
catttggaacttgagaagcattcattgagtgttgatgtgtgtcacccaaacataaatgaa
attaatgataaggagctcctgatgtttttggagaagaatacctcaggttgtatatgtgca
gtgtacaagttccctggcatggtgaaggatgttgaggatagagaaaagtggggcaagata
acattttcgtcccctgatgctgccaaaagagctgcagagctggatggagaggagttttgc
ggctcctccttgaaaatacttccttcacattcagttattggaggggataaaacattttca
tttcctgaagtgaaagcaaaaatttattggcctcgtagatttagcaaaggatttggtata
gttaaatgtgataaaaatgatgttgatttcatcttgagagatttttataaccttgcaatc
ggagggaggtatgtccgcagtgcactcagtaataagtccatggacagtattgtgataagt
gggcttgacaaagaacttctagaaactgaaattttggatgtactaagaactgctacaagt
agaaggattctagactttttcttggtgaggggagatgctgttggaaatccgtcatgcagt
gcttgcgaagagtcgctctttaaagaaatttcccccttaattcccaaaataaaccctcac
attagttcttgccgtgttcaggtatttccacctgagccgaaagattctttcatgagagct
ttaattaattttgatggaagattacatttagaggcagcaaaagctctggagaaaattgaa
ggaaaggtgttacctggatgtctttcttggcagaagataaagtgcgagcagttgtttcat
agttccttgatatttcctgctccagtatatcatgttattgcagaacaactggaaaaaata
ctcacaagcttcaacaatttaaaaggtcttgagtggaacctaaacagaactgccaacggt
tcccaccgattgaagataacagccaatgccacaaagactgtggcagaagttaggaggcct
ctggaagaactgtcgagagggaaagtcattgaccatgacagcatcactcctgcagctcta
cagctcatgttgtccagagatggctttaatcttaaaagctctatacagcaagagacaaga
acttacattatttttgacaggcaaaatctgaacttacggatttttggttcacccaacagg
attgctttggctcagcagaagttaattcaatctctactctccctccatgaaaaaaagcag
ttagtaatctctctgagagggaaggacctaccttctgacttaatgaagcaagtggttaag
aattttgggccagatcttcacgggctaaaagagaaggtacctggggctgatctcgaactt
aacacccgccaacaaataatctttcttcatggcaacaaggagttgaaaccaagagtggag
gaaataactctggaaattgcgcgttcaagccatcatttagttgagagacttgacactgga
cctagttgcccaatttgcctgtgtgaggttgaggatggatataaacttgaaggctgtggt
catttgttctgccggctgtgtctggtggagcaatgtgaatctgctattaagaaccaaggc
agtttcccaatatgctgtgctcaccaaggctgtggagatcctattttgcttacagatttt
agaactctcctgtcaaatgataagttggacgaacttttcagggcttctttgggagctttt
gtagcttcgagttcgggaacttataggttttgcccgtctcctgactgcccttcagtttat
cgagttgcagattccgacacagctagtgagccatttgtttgtggggcatgttattcagag
acatgtaccaagtgccacttagagtatcatccatacctttcatgcgagagataccgagaa
ctcaaggatgacccagactcatctctgaaggagtggtgtaaagggaaagaacaagtcaag
agctgttttgcttgtgggcaaataattgagaagatagatgggtgcaatcacgttgagtgc
aagtgcggaaaacatgtctgctgggtttgcttggagatctttacaagtagtgatgaatgt
tatgatcatttgagaactatacacatgaccatataa
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integrated database retrieval system
