Medicago truncatula (barrel medic): 11416649
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Entry
11416649 CDS
T01716
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1
KO
K14411
RNA-binding protein Musashi
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
11416649
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11416649
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
11416649
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Nup35_RRM_2
SET1_RBD
Motif
Other DBs
NCBI-GeneID:
11416649
NCBI-ProteinID:
XP_003594254
UniProt:
G7IP95
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All DBs
Position
2:complement(9515618..9519726)
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AA seq
481 aa
AA seq
DB search
MDPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER
VVMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTES
DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKR
AVPKDLSPSPSRGQLGGFSYGTMSRVGSFSNGFAQGYNPSLIGGHGLRLDGRLSPANVGR
SGYSLFSPSYGTGLNFEPPLNQNENENFTSNFIMGRALSSPYSASPSRYNNAMAYAAGSN
VGNSSAISSTNQSLWGNGNLNYANNPASSDAFLGYGSENSSIGSFGNIGSLWSTSVGAAN
QAGTIGSGYGKSSLNYRLGDVILGSKAVGYGKNSESNVESDSSYAFSNGSYGEAYKSTFE
AGPFYQDHTWRPTTSELEDSGPLSFGLENAVSDLMRKSSSSGHIGAYAAVANRQSNRGIA
A
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggacccggggaagctattcattggagggatttcctgggatacaaatgaagaccgactc
agacagtattttcagaactttggagatgtagttgaagctgtgataatgaaggatcggacc
acgggacgtgctcgtggttttggatttgttgtttttgctgatccttctgttgccgaacgc
gttgttatggaaaaacatgtcatagatggtagaactgttgaagcaaaaaaagctgtccct
agagatgatcagaatgtgtttactagaagcaacagcagcagtcatggatcgcctgctcct
actcctatacgcacaaaaaagatatttgttggaggtctagcatccacagttactgagagt
gattttaagaattactttgatcaattcggaacaattactgatgttgttgtaatgtatgat
cataacactcaacgtcctagaggttttggattcatcacatatgattctgaggaagcagtt
gagaaagtgctgcacaaaacttttcacgaacttaatggtaaaatggttgaggttaagagg
gctgtcccaaaggacttatctccaagtccaagtagaggtcagctaggtggatttagttac
ggtactatgagtagagttggtagtttttctaatggttttgctcagggatataatccaagc
ctgattggaggacatggacttagattagacggtagattgagtcctgctaatgttggccgt
agtggatattctcttttcagtcctagttatgggacaggactcaactttgagccaccattg
aaccaaaatgaaaatgaaaactttacttctaactttatcatgggccgtgcattgagttct
ccatacagtgcaagtccgagcaggtacaataatgccatggcatatgctgctggttcaaat
gttggcaacagttcagccataagttcaacaaatcagagtttgtggggtaatggaaatctt
aattatgctaataaccctgcaagctctgatgctttcttaggttacggaagtgaaaattca
agtattggttcatttggcaatattggatcgctttggagtacctctgttggtgctgctaat
caagctggaactattggctctggttatggtaaaagcagtcttaattataggcttggagat
gtgattttagggtcaaaagcggtaggttatggaaaaaacagtgaaagcaatgttgaatca
gattcatcgtacgctttctcaaatggcagttatggcgaggcatataaaagtacctttgaa
gctgggccattttatcaagaccatacttggagaccaacaacttcagaactagaggattct
ggtcctcttagttttggccttgaaaatgccgtttcagatttaatgcgcaaaagctctagt
agtggtcacattggggcttatgctgctgttgctaatagacaatcaaacagaggaattgct
gcttag
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