KEGG   Medicago truncatula (barrel medic): 11417477
Entry
11417477          CDS       T01716                                 
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 9A
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03020  RNA polymerase
mtr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    11417477
  09124 Replication and repair
   03420 Nucleotide excision repair
    11417477
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mtr03021]
    11417477
   03400 DNA repair and recombination proteins [BR:mtr03400]
    11417477
Transcription machinery [BR:mtr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     11417477
DNA repair and recombination proteins [BR:mtr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      11417477
SSDB
Motif
Pfam: Zn_ribbon_RPB9 Zn_ribbon_TFIIS
Other DBs
NCBI-GeneID: 11417477
NCBI-ProteinID: XP_003594777
UniProt: Q2HU21
LinkDB
Position
2:complement(13259368..13262315)
AA seq 114 aa
MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQ
DVAADPTLPRTKAVRCVQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
NT seq 345 nt   +upstreamnt  +downstreamnt
atgagtaccatgaagttttgtcgtgaatgtaacaacattctgtaccctaaggaagacaga
gagcagaagattcttctctatgcttgccgtaattgcgatcaccaggaggcagctgataac
ttctgtgtctacagaaatgagattcatcactctgtcgctgagcgcactcaagtgttgcag
gatgtagctgcagatccaacacttcctcgcaccaaagccgttcgctgcgttcaatgcaat
catggtgaagctgtgtttttccaggcaactgccagaggcgaggaaggaatgacacttttc
tttgtttgctgcaacccaaactgtggacaccgctggagagactga

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