Medicago truncatula (barrel medic): 11417838
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Entry
11417838 CDS
T01716
Name
(RefSeq) CSC1-like protein HYP1
KO
K21989
calcium permeable stress-gated cation channel
Organism
mtr
Medicago truncatula (barrel medic)
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
mtr02000
]
11417838
Transporters [BR:
mtr02000
]
Other transporters
Pores ion channels [TC:
1
]
11417838
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSN1_7TM
PHM7_cyt
RSN1_TM
Motif
Other DBs
NCBI-GeneID:
11417838
NCBI-ProteinID:
XP_039683514
LinkDB
All DBs
Position
7:3386127..3391055
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AA seq
721 aa
AA seq
DB search
MIFSALLTSIAINFGFCSLFFTLYSILRKQPGNILVYAPRLVSEGKLQEGNQDNLEHLLP
TSGWVRRAWEPSDDEFISTAGLDAFVFIRIFVFSLKVFAFAGIVGTIFLLPVNYMGTQIC
DDSESQKTSLDSFSISNVNNGSHSAVYIFTGVVCILLYYEYEYIASKRIACFYSSKPEPR
QFSILVRGIPVPPGCTCSEAVEQFFMEYHPSAYHSHSVVRRSSKLQILVTDTDRLYKRLT
QLKDKENSPQRHRRDGFLGLFGQKVDLLDHYEKKLGDIADNVRIEQSALAGKEVPAAFVS
FKSRFGAAIALNSQPGVNPTHWITEPAPEPHDVYWPFFSVTFIRRWISRLAVFVACIALT
ILFLIPVAVVQGLTHLDQLETMFPPLRSILRLTLVSQVITGYLPIQILQLFLSFVPAIMI
FLSSLQGYISWSQIQKSACTKVLWFTIWNIFFANVLSGSALYRLNYFLEPKEFPRVLAEA
VPAQASFFMAYIVAFGWTNIASELFQLIPLSYNYVNRYFGGNFSDDFEAPSIPYYSEIPR
ILFFGLLGVTYFILAPLILPFILVYFCLGYIIYRNQLLYVYVQKFETGGEFWPIVHNCTI
FSMVLMHIIVIGIFGLKELPIASGFTLPLPIVTLLFNEYCQKRFIPIFNAYPAECLIKKD
RADQNDPNMSEFYDKLTNAYNDPALMPIKYPGRFSSHRSPLLGSSESNTNVLVSALGDML
V
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgattttttctgctcttctaacttcaattgcaattaattttggcttttgttctctattt
ttcaccctgtactctatattgaggaagcaacctggtaatattcttgtctatgcaccacgc
ttagtttccgaaggaaaactccaagagggcaatcaagataacttggaacatttgttacct
acttctggttgggtgagaagagcatgggagccttctgatgatgaatttatatcaactgca
ggcttagatgctttcgtcttcatccgtatatttgtctttagtttaaaagtatttgccttt
gctggaattgttgggacaatctttcttcttccagttaattacatggggactcagatttgt
gatgattccgagtctcagaaaacgtcattggattcctttagtatttcaaacgttaacaat
ggttcgcacagcgccgtttatattttcactggggttgtttgcattcttctatattatgag
tatgagtacattgcatcaaaaagaattgcttgcttctattcctcgaagccggagcctcgt
cagtttagtatattagtacgaggtattccggttcctcctggatgtacatgtagtgaagct
gtcgaacaattctttatggagtatcacccttctgcttatcattcacattcagttgttcgt
cgaagcagcaaacttcaaattctagttactgatacagatagactgtacaaaaggcttacc
caattgaaagataaagaaaactctcctcaaaggcataggcgtgatggatttttaggactt
tttgggcaaaaagttgatctgttagatcattacgaaaagaaattgggagacattgcagat
aatgtgagaatagaacagtctgcattggcaggaaaggaagttccagcagcatttgtctca
tttaagtcacgattcggtgctgcaatagctttgaactcgcaaccaggtgtcaatcccaca
cactggatcaccgaaccagcgccagagcctcatgatgtttattggcctttcttttctgtc
acattcattcgaagatggatcagcaggctggcagtttttgttgcttgcattgctcttaca
attctatttttaatcccagttgcagtagttcaaggccttacccatctcgatcaattagaa
accatgttcccacctctgagaagcatactgagactgacacttgtgagtcaagttataaca
ggataccttcccattcagattctacagttgtttctgtcttttgtgccagctattatgatt
tttctttcatccttgcaaggatatatttcatggagtcagatacaaaaaagtgcatgcact
aaagtattatggtttaccatctggaacattttctttgcaaacgtattatcagggtcggct
ctctaccgattgaactactttcttgagcccaaagagtttcctagagtactagctgaagct
gtaccagctcaggcatcattcttcatggcgtatattgtggcattcggatggactaatata
gcatcagaactttttcaattgattccactttcttacaattatgtaaatagatattttggt
ggaaactttagtgatgattttgaagcaccatcaattccttactacagcgaaattcccagg
attcttttctttggtcttcttggtgttacatactttatccttgctcctctcatactgcca
tttatcttggtctacttttgtttgggatacatcatttaccgcaaccagctattatatgtt
tatgtgcaaaaattcgagactggaggagaattttggcctatagtacacaactgcacaatt
ttttcaatggtgctaatgcacatcatagtaattgggatatttgggttgaaggagcttcca
atagcatccggattcactcttcctcttcctattgtcacacttcttttcaatgaatactgc
cagaagcggttcattcctatattcaacgcttatcctgccgaatgtttgatcaagaaagat
agagcagatcaaaatgatccgaacatgtccgagttttatgataagttaaccaatgcatac
aatgatccagctctaatgccaatcaagtatcccggacggtttagtagtcacagatctccc
ctacttggtagctcagaatcaaacactaatgttcttgtaagtgcattaggcgacatgctt
gtataa
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