Medicago truncatula (barrel medic): 11418314
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Entry
11418314 CDS
T01716
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
11418314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11418314
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
11418314
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
11418314
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
Stathmin
Motif
Other DBs
NCBI-GeneID:
11418314
NCBI-ProteinID:
XP_003609733
UniProt:
B7FL19
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All DBs
Position
4:58360703..58366080
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AA seq
327 aa
AA seq
DB search
MRGIHLQLSQTQKLRLQKALEHLESLSSKVNSDSSVTIADSIPVNHEDGVLKGHGTADLD
GEVVATLCGVVERVNKLVYVRALRSRYKPEVGDIVIGRVIEVAQKRWRLDINYSQNAYLM
LSAMNMPDGVQRRRTALDELNMRCIFEEADVICAEVRGFQHDGLHLQARSQKYGKLSTGQ
LLTVTPYLVKRQKQHFHHLEQYGIDLIIGCNGFIWVGEHVEVRDDMVEDQVNQSDPQVLT
PNKNSVSLEEQEKKYTALETRKYICRAANAVRGLSTLGFIITSEIIKGVIDLSLSANLDI
HDMLGSEFCVLVAEKEAERRSSNKKKR
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgagagggattcatttacagttgagtcaaactcaaaagctccgtctacagaaggctcta
gaacacctcgagtctctctcttccaaggtcaattctgattcttcagttaccattgccgat
tccatccccgtcaaccatgaagacggcgtactcaagggacacggaaccgctgatctcgac
ggcgaagtcgtcgccactctatgtggtgtcgttgaacgtgttaacaagcttgtttatgtc
cgcgctttacgctcaaggtacaaacctgaggttggtgacattgttattgggcgtgtcatt
gaggttgctcagaagcgttggagattggatattaattacagtcaaaacgcgtatttgatg
ctttctgctatgaacatgcctgatggtgtacagaggcgaaggacagctttagatgagcta
aatatgcgctgtatttttgaggaggcagatgtcatttgtgctgaagttcgtggttttcag
catgatggcttacaccttcaagcaagaagtcaaaaatatggaaagcttagtactggtcaa
ctgcttacagtcacaccgtatttagtgaagaggcagaaacaacatttccatcatctagag
cagtacggtattgatttaataattggctgtaatgggttcatatgggttggggaacatgtt
gaagtcagagatgacatggtagaagatcaagtgaaccaatctgatccacaggttttaact
cccaataaaaattctgtgagtcttgaagaacaagagaaaaagtacacagcactggagaca
agaaagtacatatgcagggctgctaatgctgttagaggattatccactttaggattcatt
ataacatcggaaatcatcaagggagttattgatctcagcctttctgcgaatcttgatata
cacgacatgcttggttccgagttctgtgttctggttgccgaaaaagaggcagaaaggaga
agctcaaataaaaagaagcggtag
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