Medicago truncatula (barrel medic): 11418819
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Entry
11418819 CDS
T01716
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
11418819
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mtr03041
]
11418819
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
11418819
Spliceosome [BR:
mtr03041
]
Complex A
U2 snRNP components
U2 related factors
11418819
Complex B
11418819
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
FeoA
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
11418819
NCBI-ProteinID:
XP_024632515
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All DBs
Position
2:786903..792590
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AA seq
1114 aa
AA seq
DB search
MEEVKHKSRKEDTDSKRSHRSDRDRKDRSSDVSRHKDKRDRSESRRHDRDKSTDSDEKHD
RDREKRREIKEKEKARFHDVEREKQRERKRERERDEKEKERVREKEREREEKERERVRER
KEEKERIREKERRERERRDYDREKEKEKEKEKERDRGRRVREREKHRDVDSENSDGELRE
RNRKRHKKDDDDYKRREKEKSSGKSSRKIEVVDGSPRRKSDGDDSDSKEKAKKQTREEEM
EEEQKRLDDEMEKRRRKVQAWQELRRLEEEAQRKKQGEASVVEAESGKKWTLDGEESDDE
DGTGKHTSMDIDEDDKPADNEPTDSMAVDVDKGTVASDLQNGDAGAPAEDEIDPLDAFMN
SMVLPEVEKLNNAVNSAPPDKASDLNPKDKGAESRNGGQSRKGSNKSIGRIIPGEESDSD
YADPEVEGDPLDEDDDEFMKRVKKTKAEKLSIVDHSKIDYIPFRKNFYIEVKEVSKMTVE
EVAFYRKQLELKIHGKDVPKPVKSWNQTGLTSKILDTIKKANFEKPMPIQAQALPVIMSG
RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVVVGDGPIGLIMAPTRELVQQIHSDIRKFT
KVMGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMD
EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVV
NKDIAQLVEVRPENERFLRLLELLGEWYEKGKILVFVHSQDKCDALFKDLMKHGYPCLSL
HGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGR
TGRAGRKGCAITFISEEDARYAPDLVKALELSEQIVPDDLKSLAEGFMAKVTQGLEQAHG
TGYGGTGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHHTPIS
AAQLIPIGGIPSVSTVLPVIGSIATNDGATRAALAAMNLQQNIAKIQSEALPEHYEAELE
INDFPQNARWKVTHKETLGPISEWTGAAITTRGQFFPPGKVAGPGDRKLYLFIEGPSEQS
VKRAKAELKRVLEDITHQALQLPGGTQPGKYSVV
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggttaaacataaatctaggaaagaagatactgattctaagaggagtcatcgt
agtgatcgagatcgtaaggatcgaagcagcgatgttagtaggcacaaggataagagggat
cgtagtgaatctcgaaggcacgatagagataaaagtactgattctgatgagaaacatgat
agagatagggagaagaggagagaaattaaagagaaggagaaggcacgttttcatgatgtc
gaacgagaaaaacagagggagaggaagagggaaagagagagggatgagaaggaaaaggag
agagtgagggagaaggaaagagagagggaagagaaagaaagggagagagttagggagaga
aaagaggagaaagagaggattagagagaaagaaagaagggagagggaaaggagggattat
gatagagagaaggaaaaggaaaaggaaaaggaaaaggagagagatagaggtcggagagta
cgtgagagggagaagcatcgggatgttgatagtgaaaacagtgatggggaattgagggag
agaaatcgtaagcggcataagaaagatgatgacgattacaagaggcgggagaaggaaaag
agttcgggaaagtcaagtaggaaaattgaggtggttgatgggagtcctaggagaaagagt
gacggagatgactcggattctaaagagaaagctaagaaacagacccgtgaggaggagatg
gaagaggaacaaaagaggttggatgatgaaatggaaaagcggaggaggaaagttcaagcc
tggcaagagctaaggaggttggaggaagaggcacaaagaaaaaagcaaggtgaagcaagt
gttgttgaagccgagtctggaaagaaatggacacttgatggggaggaatctgatgatgaa
gatggaactggtaaacatacgagtatggatatagacgaagacgacaaacctgctgataat
gaacctactgattcaatggcggtagatgttgacaagggaactgttgcgtctgatttacag
aatggagacgctggtgctcctgcagaagatgaaatagacccgttggatgctttcatgaat
tctatggttcttcccgaggttgaaaagcttaataatgctgttaactcagcacctcctgat
aaagcttctgacttgaatcccaaagataaaggggctgagagtagaaatggtggacaatca
aggaaaggttcaaataaatctattggcaggataattcctggtgaagagtctgattcagat
tatgcagatcctgaagttgaaggcgatccattagatgaagatgacgatgagttcatgaaa
agagtgaagaaaacaaaagctgaaaagctttctattgttgaccactcaaagattgactat
ataccattcaggaagaatttctatattgaagtgaaggaggtttcaaagatgactgttgaa
gaagttgcattttacaggaagcagttagagttgaagatacatggaaaggatgtgcccaag
cctgtaaagtcatggaatcaaactggactcaccagcaaaattttagacacaataaagaag
gcgaactttgaaaagccaatgcctattcaagctcaggcgttgcctgtaattatgagtggt
cgagattgcataggcgttgccaaaaccgggtcaggtaaaacccttgcttttgttctgcca
atgttgaggcatatcaaggatcagccaccagttgttgtaggagatggacctattgggctt
attatggcccctacaagagaacttgttcaacagattcacagtgatataaggaagttcaca
aaggtaatgggtatcaggtgtgtgcctgtctatggaggttctggtgttgctcaacaaatc
agtgaattgaaacgtggtactgagatagtagtttgtactcctggtaggatgattgacata
ttgtgcactagtagtggaaaaattactaacctgcgtagagtaacttatctggtcatggat
gaggcagatcggatgtttgatatgggctttgaacctcaaatcacaagaattgttcagaat
attcggccagatcgtcaaacagttctcttctctgccactttcccccgccaagttgaaatt
ttggctcgcaaggttttgaataaacctgttgaaatacaagttggtgggaggagtgttgtg
aacaaagatatagcacagttagttgaggtgaggccagaaaatgagaggttccttagactc
ttggaactacttggagaatggtatgagaaaggaaagattttggtatttgtccactcacaa
gataaatgtgatgcactgttcaaggatctaatgaaacatggttatccatgtctttctctt
catggggctaaggatcagacagaccgtgaatccacaatatctgattttaaaagcaatgtc
tgcaatttgctggttgcgacaagtattgctgccaggggattggacgttaaggagctcgaa
ttggtgatcaattttgatgttccaaaccactatgaagattatgtacatcgtgttgggcgt
actggccgtgctggccgaaagggttgcgctatcacatttatttctgaggaagatgcaaga
tatgcaccagatctggtgaaagctttggagctatctgagcagattgttcctgatgatctg
aaatcccttgccgagggctttatggcgaaagtgactcaaggactggagcaagcccatggg
actggttatggaggcactgggtttaaatttaatgaagaggaagatgaggtgaggagagca
gcgaagaaagcccaagccaaagaatatggatttgaagaagacaagtcagattcagaagat
gaagatgaaggtattaggaaggcaggaggtgatatctcacagcaccatactccgatctct
gcagcccaactgattccaattggtgggataccatctgtttcaacagtcttgcctgtgata
ggatctattgctacaaacgatggggctactcgagcagcattagctgctatgaacctgcag
caaaacatagcaaaaatacaatctgaagcattgccagagcattatgaggctgagttggaa
ataaatgatttccctcagaatgctcgttggaaagtcacacacaaggaaactttgggcccc
atttctgagtggactggagctgctattactacaagggggcagtttttcccacctggcaaa
gtcgcagggcctggggatcgcaaactctacttgttcattgagggtcctagtgaacagtct
gttaagagagccaaagcagaattgaaacgagttttggaagatatcactcatcaggctttg
caactacctggtggaactcaacctggcaaatactctgttgtataa
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