Medicago truncatula (barrel medic): 11420002
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Entry
11420002 CDS
T01716
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
11420002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mtr03041
]
11420002
03009 Ribosome biogenesis [BR:
mtr03009
]
11420002
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
11420002
Spliceosome [BR:
mtr03041
]
Complex A
U1 snRNP components
U1 related factors
11420002
Complex B
11420002
Ribosome biogenesis [BR:
mtr03009
]
Eukaryotic type
Pre-60S particles
Helicases
11420002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
SWI2_SNF2
AAA_22
Motif
Other DBs
NCBI-GeneID:
11420002
NCBI-ProteinID:
XP_003594626
UniProt:
G7IKZ2
LinkDB
All DBs
Position
2:12361805..12369376
Genome browser
AA seq
1175 aa
AA seq
DB search
MATTEAAGPRYAPDDPTLPTPWKGLIDGSTGLLYYWNPETNVTQYEKPGPVNPPAPAAST
PSLAPIPVAHSMTAGGVGQQQHGQQMMQVQQLSQQQQGGHYGQGMPQQQSPHMVQAAQQQ
SSQTAQPVQPQPAQQPGLHQSRPQMMQPQGQPMMQYQGQQQYQQMHHQMPPQAIPRPQQF
GQGNSQDHGSQLVQPQAPQFTPQNMHYMGYQQNMISPRQPNSQQIQPNMHPSGQPNPQQN
QHNIHNQPFENQHDFKPAMPKMEEAEFKNGSQVGFSPSQYPQRSGLPVQNNQNIPAEVSS
GQVPNAGVNAGQPQQFRGFSGGMQQSTPTMQSQQGGSDLFYQHGPNFQNQMSPGMMHGHT
SNAHPVAQKMGHEDNLHGRGGNDYYYNSNKEMPPMGRQQPDMTQMPIPRNPQDMRIGNSP
FQNNVPSGNGSGITGNAMSNMFTPPIGGPSALSSNSFTRPPYGGSSDVTDLSAAELYCQQ
HEVTASGDNIPPPFMTFDSTGFPPEILQEVCSAGFSNPTPIQAQTWPIALQGRDIVAIAK
TGSGKTLGYLMPAFILLRQRRNNSLNGPTVLVLAPTRELATQIQEEVFKFARSSRVSCTC
LYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEP
QIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGNVDELAANKSITQYVEV
VPQMEKQRRLEQILRSQERGSKIIIFCSTKKLCDQLARSIGRTFGAAAIHGDKSQGERDW
VLGQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAY
TFFSEQDWKHAGDLIKVLEGANQHVLPELRQIASRGPPSFGKDRGGMNRFDSGGGGGGGG
RWETGGRGGMRDSGFGGRGGMRDGGGMRDGGGFGGRGGMRDGGGFGGRGGMRDGGFGGRG
GMRDGVGGSGGRGDFFPGRGNRGRGFDAPRGGNVGWGRGDRGGPGDRYNMDGRGQGRGRG
RFDNRRDVQRSRDRSYSRSPDRVRTWDINRSSSRSRSRSRSRSWSRGRSRSRSWSRGRSY
SRSRSPRSRSRGRSYSRSRSPKKTRRVKSKFSDTNDVVPPEAGASDPKMFPIPANTQGNS
VTGTEHVEQLPVVGGTGSTNPEAVVDVSHQPASDI
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atggctacaacagaggcagctggtcctagatatgcacctgatgatcctacgttaccgacg
ccgtggaaaggtttgattgatggaagtactggtttgttgtattattggaatcctgaaact
aatgttactcaatatgaaaagccggggccggtgaatccgccagctcctgcggcttctacg
ccgagcttggcgcctatacctgttgctcattcgatgacagctggtggggtggggcaacaa
cagcatgggcaacagatgatgcaagtgcagcagctttcacaacaacagcagggcggtcat
tatggtcaagggatgccgcagcagcaaagtcctcatatggtgcaggcggctcagcagcag
tcttctcagactgctcagcctgtgcagccacaaccggcgcaacaacctgggttacaccaa
agtagaccacagatgatgcagcctcaagggcagccgatgatgcagtatcaaggacagcag
caatatcagcaaatgcatcatcagatgcctccacaggcgattcctcgtccacaacaattt
ggacaggggaattctcaggatcacggttcgcagcttgtgcaaccgcaagcgccgcaattt
actcctcagaatatgcattatatgggatatcaacaaaacatgatttcgcctaggcaacct
aactcacagcagattcagccgaacatgcacccatctgggcaaccgaacccccagcagaat
cagcataatatacataaccagccctttgaaaatcaacatgattttaaacctgcaatgccg
aagatggaggaagcagagtttaaaaatggaagccaagttggtttctcaccgtcacagtat
ccacaaaggagtggcttgcctgttcaaaacaaccaaaacattcctgctgaagttagttcc
ggtcaggtgcctaatgcaggtgttaatgctggccagccacaacaattcaggggcttttca
ggcggcatgcaacagtctaccccgacaatgcagtcacagcagggtggttctgatttattt
taccaacatggtcctaactttcagaaccagatgagtccaggaatgatgcatggtcataca
tccaatgcgcatcctgttgcacaaaagatgggacacgaggacaatttacatggtagaggt
ggaaatgactattattataattctaataaagagatgccaccaatgggtcgtcagcagcca
gatatgacccaaatgccgattcccagaaatccgcaggatatgaggattggcaattcccct
tttcaaaataatgtccccagtggaaatggaagtggtattactgggaatgctatgagcaac
atgttcactcctccgataggaggaccttctgctctttcaagtaactcttttacgaggcct
ccgtatggtggatcttcagatgttactgatctctcagcagctgaattatactgtcagcaa
catgaagttacagcatcgggtgacaacattccacccccattcatgacatttgattctacc
gggttccctccagagatattgcaagaggtttgttcagcgggcttctcaaatccaacacca
atacaggctcaaacatggcctattgccctacaaggtagagacatagtggcaattgccaaa
acaggctctggaaaaacactaggctacttaatgccggccttcattcttcttaggcagcga
cgcaataattctctgaatggacccaccgttttggttttggctccaacacgtgaacttgca
acacagatccaagaggaggtcttcaaatttgcacggtcttcaagagtatcttgcacgtgc
ttgtatggtggagcgcctaaagcccttcagctaaaagagttagatcggggggcagacatt
gttgttgccacacctggcaggctcaatgatatacttgaaatgaaaaaaattgactttggg
caagtttcactccttgtgcttgatgaggctgaccggatgcttgatatgggttttgagcct
caaatccgtaagattgtgaatgagattccaccacgtagacaaactctcatgtatactgca
acctggccaaaagaagttagaaaaattgcaggcgatcttcttgtaaatcctgttcaagtt
aacattggaaatgtagatgagcttgctgcaaataaatctatcacacagtatgttgaagtt
gtcccacaaatggagaaacaaaggcgtctagagcagatcctcagatcccaggaacggggt
tctaagatcataatattttgttccacaaagaagttatgtgatcagcttgcccgtagtatt
ggccgaacttttggggctgctgcaattcacggtgataagtctcaaggtgagagagactgg
gttttaggtcaattccggactgggaagtctccaattttggttgccaccgatgttgctgct
cgtggtcttgatattaaagacataagggtggtgatcaactatgatttccccaatggtgtt
gaggactatgtacaccgaattggaagaactggaagggcaggtgctactggagtggcatat
acctttttctctgagcaggattggaaacatgcaggtgatttaatcaaagttttggagggt
gctaaccagcacgtgcttccagagttaaggcaaattgcttcacgtgggccaccaagcttt
ggaaaggataggggcgggatgaatcgctttgactctggtggtggcggcggtggcggtggg
cgctgggaaactggtggtcgtggcggcatgagggacagtggttttggtggtcgtggcggc
atgagggacggtggtggtatgagggatggtgggggttttggtggacgtggtggcatgagg
gatggtggtggctttggtggtcgtggaggcatgagggatggtggctttggtggtcgcggt
ggaatgagggatggagttggtggaagtggagggaggggtgatttctttcctggtaggggc
aacagaggtagaggatttgatgctccgcgtgggggcaatgttggttggggtaggggtgac
cgcggtggtccaggtgataggtataatatggatggtcgtggacaagggcgtggacgtgga
agatttgacaacagaagagatgttcagagaagtagagacagaagttacagtcgtagccct
gatagagttcgaacatgggatatcaacagaagcagcagcagaagtagaagtagaagtagg
agtaggagctggagcaggggtcgcagtagaagtcgcagctggtctcgtggtcgcagctat
agccgtagtcgtagtccacgcagtcgtagccgtggtcgcagttatagccgaagccgcagc
cccaagaaaactaggcgtgttaagtcgaaattttctgatacaaatgatgttgtgccacct
gaagcaggagcttccgatcctaaaatgttccctatacctgccaacacccaagggaattct
gttacgggaacagaacatgtggaacagctacctgttgttgggggcacaggctcaactaac
ccagaggctgtagtggatgttagtcatcaaccagcttctgatatttga
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