Medicago truncatula (barrel medic): 11420842
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Entry
11420842 CDS
T01716
Name
(RefSeq) exosome complex component RRP43
KO
K12586
exosome complex component RRP43
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
11420842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11420842
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
11420842
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Gp18_dom_I
Motif
Other DBs
NCBI-GeneID:
11420842
NCBI-ProteinID:
XP_003588420
UniProt:
G7I253
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All DBs
Position
1:207607..214992
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AA seq
304 aa
AA seq
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MSVPNAAATEDLSSEMEVDAFRRLFPLRYFERHLAESIRSDGRPLREARDTSIFLGAVAS
ANGSALVKIGSTTMLTAIKMEVMIPSLESPDEGCLAIDFHMPPICSPIVRPGRPAEAEPV
VSKQLSDTITSSGMIDLRELSLVGGKAAWMAYLDIYCLDADGSLFDAALLSAVAALSHLQ
IPAVAMNDDGKIVLMSDEDGQKQAKEQVNKEKRKLTLKSIPLSLTCILHKNYILADPTAE
EESIVETHVTIILDTSGQLISLYKPGGPVLAYTSAIQDCVALTRQRVKELKSFLDKENSA
MEVE
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttccaaatgctgctgcaacggaggatttgtcctctgaaatggaagtcgatgcg
tttcgacgcctttttccgcttcgatacttcgaacgtcatcttgctgaatccattcgttct
gatggtagaccgcttagagaagctagagataccagtatttttcttggtgctgttgcatct
gctaatgggtcagctcttgtgaagattggatccacgactatgttgactgccattaaaatg
gaagttatgattccttcgttggagtcaccagacgagggttgtttagctatagacttccac
atgcctccgatttgttctccgattgttaggcctggcaggcctgctgaagcagagccggtt
gtgtcaaagcagttgtccgacaccattacaagttctggaatgattgatttgagagagttg
tccttggttggtggaaaagctgcatggatggcttacttggatatctattgtttggatgct
gacgggtctctttttgatgctgctttactttctgcagttgctgctttatctcatttgcaa
attcctgctgtagccatgaatgatgacggcaaaatagtactcatgtctgatgaagatgga
cagaagcaggcaaaggagcaagtcaataaggagaagaggaagcttacattaaaaagcatt
ccattatcattaacatgcatacttcacaagaactacatcttggcagatcctactgcagaa
gaagaatccatagtggaaacccatgtgacaatcattctggatacatctggtcaactaata
tctctttacaagcctggtgggccagttcttgcctatacttctgctatccaggactgtgtt
gccttgactaggcaaagagtgaaggaactaaaaagctttttagacaaagaaaattctgct
atggaggttgagtag
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