KEGG   Medicago truncatula (barrel medic): 11421161
Entry
11421161          CDS       T01716                                 
Name
(RefSeq) pinin
  KO
K13114  pinin
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03013  Nucleocytoplasmic transport
mtr03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    11421161
   03015 mRNA surveillance pathway
    11421161
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mtr03019]
    11421161
   03041 Spliceosome [BR:mtr03041]
    11421161
Messenger RNA biogenesis [BR:mtr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     11421161
Spliceosome [BR:mtr03041]
 Complex C
  Other components
   EJC/TREX
    11421161
SSDB
Motif
Pfam: Pinin_SDK_memA
Other DBs
NCBI-GeneID: 11421161
NCBI-ProteinID: XP_003593098
UniProt: A2Q483
LinkDB
Position
2:1152479..1156634
AA seq 424 aa
MGSTAAAEKTEQELRNEIDELLRQQREITERLRDPRGLRKGALSTPLLRNNSIRQRPFVR
HGGDNHDSEDQPPAKRRLSSAVVKVGDGELTEDADAGNTKDSTGDGVNGNATVGQSDGKP
FNSHQSGLSRRDSYQRNSKASDIPTTEHVPRVLPKNEDPSLVNRNKRMLGQLLGTLEKFR
KEDKQLSGTEAFMRRSNSLQRAEQRAREESERLRKEEREQIAEKRRRDLTLRARVAAKTE
EKQLELLFLRWSEHHKRLSNFIRTKAEPPIYYLPNKPLDEEDVSTNKSKEEDFLEWKNAR
REELSEYQKQIGDQYLANVEKDLERWQNARNARKGNNDQNLQETMDKELDTHRLEHGPKK
RKIPDGTNNEDDDDDVEDINVGEDDMMDDELDDDSGRRIDETIKTETSNATADPAAATDN
EDLK
NT seq 1275 nt   +upstreamnt  +downstreamnt
atggggagtactgcggcggcggagaaaaccgaacaagaacttcgcaacgagatcgatgaa
cttcttcgtcaacaacgcgagataactgagaggcttcgagatcctcgtggtcttcgtaaa
ggtgctttatcgactcctcttctccgcaataattcgattcgccaacgtccctttgttcgt
cacggtggggataaccatgattctgaagatcaacctcctgctaaaaggagactttcatct
gctgttgttaaggttggtgatggggagctgactgaggatgctgatgctggaaacacaaag
gattcaactggcgacggtgtaaatgggaatgctactgttggtcagagtgatgggaagcct
tttaattctcaccaaagtggattgtctagaagagacagttatcaaagaaattcaaaggct
tctgacattcctactacagaacatgttccgagggtattgcctaagaatgaagacccaagc
ttggttaataggaacaaaagaatgctgggtcagcttttgggaactctggagaaattcaga
aaggaagacaagcaactctcaggaacagaggcatttatgcgaagatcaaattctttgcaa
agagctgagcaaagagcacgggaagaaagtgaaaggctcaggaaagaagagcgcgaacag
attgctgaaaaacggaggagggacttgactcttagggcacgtgtggctgctaagacagaa
gaaaagcaattggagttactgtttcttcggtggagtgagcatcataaaagactaagcaat
tttataaggactaaagcagaacctccaatctactatttgcctaacaagcccttggatgaa
gaagatgtgtcaactaataagagcaaagaagaggatttccttgaatggaaaaatgcaaga
agagaggaattgtctgagtatcaaaaacaaattggggaccagtatcttgccaatgttgag
aaggatttggagagatggcagaatgcaagaaatgcaaggaaaggaaacaatgatcagaat
ttacaagaaacaatggacaaagaattggatactcataggctcgagcatggtcccaagaaa
agaaaaatccctgacggaactaataatgaagatgatgacgatgatgtggaagatataaat
gtcggagaggatgatatgatggacgatgagttagatgatgattctggtcgaaggattgat
gaaacaattaagacggaaacgagcaatgccactgcagatcctgcagctgctactgataat
gaagacctaaagtga

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