Medicago truncatula (barrel medic): 11421161
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Entry
11421161 CDS
T01716
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03013
Nucleocytoplasmic transport
mtr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
11421161
03015 mRNA surveillance pathway
11421161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11421161
03041 Spliceosome [BR:
mtr03041
]
11421161
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
11421161
Spliceosome [BR:
mtr03041
]
Complex C
Other components
EJC/TREX
11421161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
11421161
NCBI-ProteinID:
XP_003593098
UniProt:
A2Q483
LinkDB
All DBs
Position
2:1152479..1156634
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AA seq
424 aa
AA seq
DB search
MGSTAAAEKTEQELRNEIDELLRQQREITERLRDPRGLRKGALSTPLLRNNSIRQRPFVR
HGGDNHDSEDQPPAKRRLSSAVVKVGDGELTEDADAGNTKDSTGDGVNGNATVGQSDGKP
FNSHQSGLSRRDSYQRNSKASDIPTTEHVPRVLPKNEDPSLVNRNKRMLGQLLGTLEKFR
KEDKQLSGTEAFMRRSNSLQRAEQRAREESERLRKEEREQIAEKRRRDLTLRARVAAKTE
EKQLELLFLRWSEHHKRLSNFIRTKAEPPIYYLPNKPLDEEDVSTNKSKEEDFLEWKNAR
REELSEYQKQIGDQYLANVEKDLERWQNARNARKGNNDQNLQETMDKELDTHRLEHGPKK
RKIPDGTNNEDDDDDVEDINVGEDDMMDDELDDDSGRRIDETIKTETSNATADPAAATDN
EDLK
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggggagtactgcggcggcggagaaaaccgaacaagaacttcgcaacgagatcgatgaa
cttcttcgtcaacaacgcgagataactgagaggcttcgagatcctcgtggtcttcgtaaa
ggtgctttatcgactcctcttctccgcaataattcgattcgccaacgtccctttgttcgt
cacggtggggataaccatgattctgaagatcaacctcctgctaaaaggagactttcatct
gctgttgttaaggttggtgatggggagctgactgaggatgctgatgctggaaacacaaag
gattcaactggcgacggtgtaaatgggaatgctactgttggtcagagtgatgggaagcct
tttaattctcaccaaagtggattgtctagaagagacagttatcaaagaaattcaaaggct
tctgacattcctactacagaacatgttccgagggtattgcctaagaatgaagacccaagc
ttggttaataggaacaaaagaatgctgggtcagcttttgggaactctggagaaattcaga
aaggaagacaagcaactctcaggaacagaggcatttatgcgaagatcaaattctttgcaa
agagctgagcaaagagcacgggaagaaagtgaaaggctcaggaaagaagagcgcgaacag
attgctgaaaaacggaggagggacttgactcttagggcacgtgtggctgctaagacagaa
gaaaagcaattggagttactgtttcttcggtggagtgagcatcataaaagactaagcaat
tttataaggactaaagcagaacctccaatctactatttgcctaacaagcccttggatgaa
gaagatgtgtcaactaataagagcaaagaagaggatttccttgaatggaaaaatgcaaga
agagaggaattgtctgagtatcaaaaacaaattggggaccagtatcttgccaatgttgag
aaggatttggagagatggcagaatgcaagaaatgcaaggaaaggaaacaatgatcagaat
ttacaagaaacaatggacaaagaattggatactcataggctcgagcatggtcccaagaaa
agaaaaatccctgacggaactaataatgaagatgatgacgatgatgtggaagatataaat
gtcggagaggatgatatgatggacgatgagttagatgatgattctggtcgaaggattgat
gaaacaattaagacggaaacgagcaatgccactgcagatcctgcagctgctactgataat
gaagacctaaagtga
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