Medicago truncatula (barrel medic): 11421219
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Entry
11421219 CDS
T01716
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
11421219
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mtr03041
]
11421219
Spliceosome [BR:
mtr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
11421219
Complex C
U5 SnRNP specific factors
11421219
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
11421219
NCBI-ProteinID:
XP_003626843
UniProt:
G7LDI5
LinkDB
All DBs
Position
8:2769599..2779804
Genome browser
AA seq
2337 aa
AA seq
DB search
MSNNNHHVSPPGTTIPHFPPPPSDSESLLDERARKWKKLNSNRYCDSRKLGFIESQKELM
PPEHVRKIIRDHGDMSSTKFRHDKRVYLGALKFVPHAIYKLLENMPMPWEQVRDVKVLYH
VSGAITFVNEIPLVIEPIYIAQWSTMWIMMRREKRDRRCFKRMRFPPFDDEEPVIDYADN
LLEVEPLEAIHLELDEEEDGPVFDWFYDHKPLVKTKFVNGLSYRKWCLPIPVMETLHRLA
GQLLSDLCDRNYFYLFDVESFFTAKALNMCIPGGPKFEPLYRDAEKGDEDWNEFNDIHKL
IIRSKLRTEYRIAFPHLYNDRPRKVRLGVYHTPMVVYVKADDPDLPAFYYDPLIHPIAGA
GNKERCEMEICNEDDDDWILPDGVEPFLKDVELYTDTTTDGMSLLFAPRPFNMRSGRMRR
AEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKPQQKKNLFRSLQATK
FFQTTELDWVEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREILRLTKLVVDANVQYRLGNVDAFQLADGLQYTFSHVGQLTGMYRYKYRLLR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVIHDVVDAIPEGMKETKSRVILQHLSEAWRCW
KANIPWKVPGMAVPIENMILRYVKSKADWWTNVTHYNRERIRRGATVDKTVCRKNLGRMT
RLWLMAEQERQCNYSKDGPYVTPEDGVTIYTTIVHWLESRKFSHIPFPPLSYKHDTKLLI
LALERLKESYSGSARLNQFQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYGYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGIN
NLEGIWDTSDGHCVVMLQTKFEKFFEKIDILMLNRLLRLVLDHNIADYITAKNNVVLSYK
DMSHTNKYGLIRGLQFASFVAQYYGLILDLLLLGLTRAREIAGPPQMPNEFITYWDTKVE
TRHPIRLHSRYIDKVYMLFRFTHEEARDLIQKYLTEHPDPNNENMVGYNNKKCWPRDARM
RLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKI
RTTQEAFGNTRDGVWNLQNEQTKERTATAFLRVDDEQIKMFENRVRQILMSSGSTTFTKI
VNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYSP
KEVGGLGMLSMGHILIPQSDIRHNQKTDVGVTHFRSGMSHEEGQLIPSLHRYIQPWEREF
NDSQRVWAEYAVKRQVAQAQNRRLTLEDLEDSWDQGIPRINTLFQKDRHTLAYDKGWRVR
LDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGIEQILEHTLFKGTYFPTWE
GLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTG
IFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIETVQKETIHPRKS
YKMNSSCADILLFAAHKWPMSKPSLVAESKDVFDQKASNKYWIDVQLRWGDYDSHDIERY
TRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWFPGSKPLLQQAMNKIMKLNPA
LYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFNNQIKWFVDDTNVYRVTIHKTFEGNLT
TKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEEPK
QIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNI
YDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLRPDITAVTEPHHIWPSLSDDQWMKV
EVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAEIEKQAREANQV
TAVTTQTTNVHGEGLIVTTTSPYEQAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKE
TGYTYIMPKNILKKFICIADLRTQISGYLYGISPPDNPQVKEIRCIVMPPQWGTHQHVHL
PSDLPEHDFLNDLEPLGWMHTQPNEVPQLSPQDLTSHAKVLENNKQWDGEKCIILTCSFT
PGSCSLTAYKLTPSGYEWGRINKDTGSNPHGYLPTHYEKVQMLLSDRFIGFYMIPDNGPW
NYNFMGVRHASGMKYGVKLGTPREYYHEDHRPTHFLEFSNMEEGETIAKGDREDTFS
NT seq
7014 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacaacaaccaccatgtttcaccaccgggaaccaccatccctcactttcctccg
ccaccgtccgattcagaatcacttctcgacgagagagctagaaaatggaagaaactgaac
tcaaatcgttactgcgatagtcgaaagttagggttcatcgaatctcagaaagaactcatg
ccaccggaacacgttcgaaaaatcatccgcgatcacggtgatatgtcatcaacgaaattc
cgtcacgataagcgagtttatctcggagcactgaaattcgtaccgcatgctatttataag
cttctggaaaatatgccaatgccatgggagcaagttcgagatgttaaagttctgtatcat
gtttctggtgctattacatttgtgaatgaaattccgcttgttattgaaccaatttacatc
gctcaatggagtacaatgtggattatgatgcggagagagaagcgtgatcgacgatgtttt
aagaggatgaggttcccaccgtttgatgatgaggagcctgtgattgattatgctgataat
ctgttggaagttgaaccgctcgaagcaattcaccttgagttagatgaagaggaggatggt
cctgtgtttgattggttttatgatcataagccactcgtgaaaactaaatttgttaatggg
ctgagttatcgaaaatggtgtcttccgattccggtgatggaaactttgcataggcttgct
gggcagcttttgtctgatttgtgtgataggaattatttctatttgtttgatgtggagtcc
ttttttacagctaaggctttgaatatgtgtatacctggtgggccgaagtttgagcctctg
tatcgtgacgcggagaaaggagatgaagattggaatgagtttaatgacattcacaaactt
attataaggtcaaaacttaggactgagtataggattgcttttccgcatctttataacgat
aggccgaggaaagtaaggcttggtgtttaccatactcccatggttgtgtatgtgaaggct
gatgatcctgatttacctgcattttattatgatcccttgatacacccgatagctggtgct
ggtaacaaagagcggtgcgagatggaaatctgcaatgaggatgatgatgactggattttg
cctgatggtgtggaaccttttctcaaagatgtggagctttataccgacactaccactgat
ggaatgtcattgctttttgctccccgtccttttaacatgagatcgggccgaatgaggcgt
gcagaagacattcctcttgtgtcagaatggtacaaggagcattgtcctccatcgtatccg
gttaaagtgagggttagttatcaaaagttgctcaagtgttttgtgttgaatgaactgcat
catagacctcctaagcctcaacaaaagaagaacttattcagatcacttcaagcgacaaag
tttttccagaccacagaacttgattgggttgaagcaggtcttcaagtttgtaagcagggg
tacaacatgttgaatctgttgatacacaggaaaaatttgaactaccttcaccttgattat
aattttaatttgaagcctgtcaaaaccttgactacaaaagagcgtaagaaatcacgattt
ggtaatgcttttcatctctgtcgtgagatccttcgtttgacgaaacttgtggtggatgcc
aatgttcagtatcgcttgggtaatgttgatgcttttcagctggcggatggcctccaatat
actttctctcatgttggtcaattgaccggtatgtatcgatacaagtataggcttttgcga
caaataagaatgtgcaaagacttgaaacacttgatttactaccgttttaacactggccct
gtcgggaagggacccggttgtgggttttgggcaccgatgtggagggtttggttattcttt
cttcgtggtattgtgccccttcttgaacgatggcttggaaatttactggcacgacagttt
gagggacgccactctaaaggagtggcgaagaccgtaactaagcaacgtgttgaaagccat
tttgacttggagcttcgggcagctgttattcacgatgtggttgatgccatcccggagggt
atgaaggagaccaagtcaagagttatattgcagcatttgagtgaagcatggcgatgctgg
aaggcaaatattccttggaaggtccctggtatggctgttccaatagagaatatgatcctt
cgatatgtgaaatcaaaagcagattggtggacaaatgtcacccattataatcgtgagcgt
ataagaagaggagcaactgttgataagactgtttgtcgcaagaatcttggaagaatgact
cgtctttggctgatggcagagcaggagcgccaatgcaattattcaaaagatggcccatat
gttactcctgaagacggtgttactatttatacaactatagtccattggttagaatctcgg
aagttctcccatattccatttccacctctatcatacaagcatgatacaaagctgcttatc
cttgcacttgagaggttgaaggaatcctacagtggttcagcaagattaaatcaatttcaa
agagaagagttggggctgattgaacaagcttatgacaatccacacgaggcattatcacga
atcaaacgacacctcctcacccaacgtgcattcaaagaagttggaatagagtttatggat
ttatatggttacttgattccggtttacgaaatagagcctctggagaaaattacagatgca
tatcttgatcaatatctgtggtatgaaggggacaaacgtcatctatttcctaactggatc
aagccagcagattcagagccaccacctcttttagtttacaaatggtgtcaaggtataaat
aatttggaaggcatctgggacaccagtgatggtcactgcgttgtgatgttgcagaccaaa
tttgagaagtttttcgagaagattgatatactaatgttaaataggcttctccgtttggtt
ctagaccacaacattgctgattatatcactgcaaaaaacaatgttgtgttgtcatacaag
gatatgagccacacgaataaatatggtcttatacgtggactacagtttgcctcctttgtt
gctcagtattatggcctgatattggatctcttgcttcttggattgactcgagcgagagag
attgctggtccgccgcagatgcctaacgagttcattacttattgggacactaaagttgag
accaggcatccaattaggctgcattcccggtacatagataaagtttatatgttatttcgt
ttcacacatgaggaggctcgggatctcattcagaaatatctcactgaacaccctgatcct
aacaatgagaacatggtggggtacaataataagaagtgctggccaagagatgcaagaatg
aggctcatgaagcatgatgtcaatcttgggaggagtgtcttttgggatatgaaaaaccgt
cttcctcgaagcatcacaacactggaatgggaaaacagcttcgtttctgtttacagcaaa
gataatccaaacttgctttttagcatgtgtggatttgaagtgcggatacttcctaaaatt
agaacgactcaagaagcattcggtaacacaagagatggtgtttggaatctccagaatgaa
caaaccaaagaaaggacagctactgctttcttaagagttgatgatgaacagattaaaatg
tttgagaatcgtgtgaggcagattcttatgtcttcgggttctactacattcacaaaaatt
gtcaataagtggaatacagctttaataggactcatgacttacttccgagaggcaactgta
catactcaagagttgttggatttgcttgtcaaatgtgaaaataaaattcagacccgtatc
aagataggactcaactcaaagatgcctagcagatttccgcctgtcattttctactcgccc
aaggaagttggaggacttgggatgttgtctatgggtcacattttgattccacaaagtgat
atacgtcacaatcagaagacagatgttggtgtaacccacttcagaagtgggatgagtcat
gaggagggtcagttgattcccagccttcatcgttatatacagccctgggaaagggagttc
aatgattcacaacgtgtctgggctgaatatgcagtgaaaaggcaggtagcacaagcacag
aataggcgcttgacccttgaggatttggaagactcatgggaccaagggattccacgtatt
aacactttgtttcagaaggatagacacactttggcttatgataaaggatggagggtacgt
ttagacttcaagcagtatcaagttttaaaacaaaatcccttctggtggacacaccagagg
catgatgggaagttgtggaacttgaataattaccgaactgatgttattcaagctcttgga
ggaattgaacaaattcttgaacacactttattcaaaggaacatattttccaacttgggaa
ggtctcttctgggaaaaagcatcaggttttgaggaatctatgaagtataagaagctcacc
aatgcacaaagatctggtctcaaccagatacccaaccgtagatttacgctttggtggtca
ccaaccattaaccgagccaatgtttatgttggtttccaggtgcagctagatctgactggt
attttcatgcatgggaaaattccaactttgaagatatctcttattcagatattcagagct
cacttgtggcagaagatccatgagagtgttgtcatggatctttgtcaggtattggatcaa
gagttggacgctttggagattgaaactgtccagaaggaaacaatccatcctaggaagagt
tacaaaatgaacagttcttgtgcagacatccttctctttgctgcccacaaatggccaatg
tcaaagcctagtcttgtagctgaatctaaggatgtttttgatcagaaggcaagcaataag
tattggattgatgttcagcttcgatggggtgattatgattctcacgatattgagcgttac
accagggctaaatttatggattacacaacagataatatgtctatatacccatctcctact
ggggttatgattggccttgatttggcatataacttgcattctgcatttgggaactggttc
cctggatcaaagccactacttcagcaggccatgaataagattatgaagttaaatcctgca
ttgtatgttttgagggaacgaatcaggaaaggtctgcagttgtactcttctgagcccact
gaaccatatttgtcttcccaaaattatggagagatattcaacaaccaaatcaaatggttt
gttgatgacactaatgtgtatcgcgttacaattcataagacttttgaaggaaatcttaca
acaaaacccatcaatggtgccatttttatcttcaatccaaggactgggcagttgtttctt
aaggttatccatacgagtgtatgggccggtcagaagcgtctcggccaactggcgaagtgg
aaaacagcagaagaagttgctgctcttgtaaggtctttgcctgtagaagaagagccaaag
caaattattgttacccgtaaaggaatgttggacccgttggaggttcacttgttggatttc
cccaatattgttatcaaaggaagtgagctgcaacttcctttccaagcatgcttgaaaatt
gagaaatttggggatcttattttgaaggccacagaaccacaaatggttttgttcaacatt
tacgacgactggctgaagagcatttcctcatacactgcattctccaggctgattcttatt
ctgcgtgcacttcatgtgaataatgaaaaggcaaagatgttactgaggcctgacataact
gctgtcactgaacctcatcacatctggccttctctaagtgatgaccagtggatgaaggtg
gaggttgcattaagagatcttatactttctgattatgcaaagaaaaacaatgtgaatact
tcagctttgacccagtctgagattcgtgatattatacttggagctgagattactccccct
tcacaacagcggcaacagattgcagagattgaaaaacaggcacgcgaagcaaatcaggtg
acagctgtaacaacacagactacaaatgttcacggtgaaggactgattgtaaccaccact
agtccctatgagcaagctgcttttggttcgaagactgattggcgtgtcagagcaatatca
gccacaaatttataccttcgagtaaaccatatatatgtgaattcggaggacataaaggaa
acgggctatacttatatcatgccaaagaacattttgaaaaagtttatatgcatagcagat
cttcgaacacagatttctgggtatttgtatggtataagtcctcctgacaatcctcaggtt
aaggaaatccggtgcattgtgatgccaccacagtgggggactcatcaacatgtccatctc
ccatcagatctgccagaacatgatttcttgaatgatttggagcctttgggatggatgcat
actcaaccaaatgaagttccgcagttgtcgcctcaggatctcacttcacatgctaaggtc
ctagagaacaataaacaatgggatggggagaagtgtattatcttgacttgcagttttact
ccgggttcttgttctttaactgcatataaactaactccatctggttatgaatggggacgt
attaacaaggatacaggaagcaacccacatggttatcttcccactcattatgagaaggtt
cagatgctcctcagtgatcgcttcattggtttctacatgattcctgataatggtccatgg
aattacaactttatgggagtgaggcacgcatcaggcatgaagtatggagtgaagcttggg
acccctagggagtattaccatgaagatcataggccaacccatttcttagagttcagcaat
atggaggaaggggagacaatcgccaagggagatcgagaggatacattctcttag
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integrated database retrieval system
