Medicago truncatula (barrel medic): 11421484
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Entry
11421484 CDS
T01716
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 57
KO
K14779
ATP-dependent RNA helicase DDX52/ROK1 [EC:
5.6.2.7
]
Organism
mtr
Medicago truncatula (barrel medic)
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mtr03009
]
11421484
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
11421484
Ribosome biogenesis [BR:
mtr03009
]
Eukaryotic type
90S particles
Helicases
11421484
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
UTP25_NTPase-like
P-loop_SecA
Drf_FH1
Motif
Other DBs
NCBI-GeneID:
11421484
NCBI-ProteinID:
XP_003625592
UniProt:
G7L1R9
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Position
7:complement(47468532..47473993)
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AA seq
619 aa
AA seq
DB search
MANDSSFLFAGIHFDRKKFGADIARFQKKDTDNSFAKIQTVTEDEESKETIEAVSGKKRK
RKKTSSEAVDGFSVFRSSTSKSNEEGQADDNDESIRLKKEQNKQLERDAIFRKNHNIHVS
GYNVPSPLQSFDELKTRYKCPSYLLWKLAELGFREPTPIQRQAIPVLLQDRECFACAPTG
SGKTLAFVCPMLMKLKAHAKGGVRAVIICHSRELSGQTYRECKKLAKGEKFRIKLMTKNL
LRNADFSKFSCDILISTPLRLCLAIKKKKVDLSRVEYLVLDESDKLFEPQLFKQIDSIIK
ACTNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASDTIKQKLVFTGSEEGKL
LAIRQSFAESLNPPVLVFLQSKERAKELYGELAFDNIRVDVIHSDLSQEERENAVDNFRA
GKTWVLIATDVVARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEED
IPFLRNVSNLMASSGCEVPSWLTELQLQKKKWKKHRPDRDSISTKPDLPKSDSISTKPKL
QKKLKKHRPKKDSIVTKPDLPKSDSISTKPKLQKKLKKHRPKKDSIVTKPDLPKSDSIST
KPKLQKKLKKHRDPKEILS
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgactcgtcgtttttgttcgccggtattcatttcgatagaaagaaattcggc
gccgatattgcacgcttccagaaaaaagacacggataacagttttgcgaagattcagacc
gtgacagaagatgaagaaagcaaggaaacaatagaagctgtgtctggaaagaagaggaag
cgcaagaaaacctcttctgaagctgttgacggattcagtgtgttccgaagttcaacatcc
aagtcaaacgaagaaggccaagccgatgataatgatgagtccattcggctgaagaaagaa
caaaataagcaactcgagcgtgatgctatcttcaggaagaatcataacattcatgtctct
ggttacaatgtgccgtccccacttcaaagctttgatgagttgaaaacaagatataaatgt
ccatcctatttattgtggaaactggcagaacttggattcagagaaccaacaccaatccaa
cggcaggctattccagtactcttacaggaccgtgaatgttttgcgtgtgccccaactggc
tctggaaaaacccttgcatttgtgtgccccatgctcatgaagctcaaggctcatgcaaaa
ggtggcgttcgagctgttatcatttgtcatagccgtgaattatctggtcaaacatacaga
gagtgcaaaaagctggccaaaggagaaaagtttcgcatcaagttaatgacaaaaaatctt
ttaagaaatgctgatttttcaaaattttcttgtgacatacttatatccactccacttcga
ttatgcttggctatcaagaagaaaaaggttgatctcagcagagttgagtatcttgtcctt
gatgaatctgataagctatttgagcctcaattgttcaagcagattgattctattatcaaa
gcatgcacaaacccctcaataatacgctctctgtttagtgctactttacctgattttgtt
gaagatcgagctcgagaactcatgcatgatgctgttcgggtaatcgttggcaggaagaat
atggcttctgatacaattaagcaaaagttagtttttaccggaagtgaagaaggaaaactt
ctagcgattcggcaaagttttgcagagagtctaaatcctccagtattggtctttctccaa
agcaaggagcgcgcgaaagagctgtatggggaacttgcattcgacaatattagagttgat
gtcatccattctgatttgtctcaagaagagcgagaaaatgcagttgacaacttcagagct
ggtaaaacatgggttttgattgccactgacgtggttgctcggggaatggatttcaaaggc
ataaactgtgtgatcaattatgatttcccagattctgcatctgcatatatccacagaatt
ggtcgttctggcagagcagggaggagtggggaagcgattacattttacacagaggaggac
attccattcctgcggaatgtatctaatctaatggcatcctcaggctgtgaagttccatct
tggttgacggagttgcagttgcagaagaagaagtggaagaagcatcgacctgacagagat
tctatctcaaccaaaccagatctacccaaaagtgattcgatctcaaccaaaccgaagttg
cagaagaagttgaagaagcaccgacccaaaaaagattctatcgtaaccaaaccggatcta
cccaaaagtgattcgatctcaaccaaaccgaagttgcagaagaagttgaagaagcaccga
cccaaaaaggattctattgtaaccaaaccagatctacccaaaagtgattcgatctcaacc
aaaccgaagttgcagaagaagttgaagaagcaccgcgacccgaaagagattctatcttaa
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