Medicago truncatula (barrel medic): 11422854
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Entry
11422854 CDS
T01716
Name
(RefSeq) regulator of nonsense transcripts UPF2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03013
Nucleocytoplasmic transport
mtr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
11422854
03015 mRNA surveillance pathway
11422854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11422854
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
11422854
mRNA cycle factors
P-body specific factors
11422854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
11422854
NCBI-ProteinID:
XP_024633164
LinkDB
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Position
2:21402921..21416738
Genome browser
AA seq
1199 aa
AA seq
DB search
MEDKGMDQNEDECRNEGETNNKQDDEEAVAHLEEIKKSIEAKMALRQTNLNPERPDTGFF
RTLDSSIKRNTAVIKKLKQINEEQRESLMDDLRSVNLSKFVSEAVAAICEAKLRSSDIQA
AVQICSLLHQRYKDFVPTLIQGLLKVFSPGKSGDETDSDKNLKAMKKRSSLKLLLELFFV
GVIEDGGIFISIIKDLTSVEQLKDREATQTSLTLLSSFARQGRIFLGLSVTGPEIHEEFM
KGLNITADQKKVIRKACYSFYDTAAELLQSEHSSLRLMEHENSKILNAKGELSEENLSSY
EKLRKSYDHLYRNVSSLAEALDMQPPVMPEDGHTTRVTSGEEAVSSAAGKDSSVVEPIWD
DEDTRAFYECLPDLRAFVPAVLLGETEPKVNEQSVKGQDQSTEILPESDKSQLVTLDSGE
VSTESSVLPEGESSEIVNDKEEKEKSKELDRDKEKEKEKEGEKKGEHEKEKLRSLEGTNL
DALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFSVPRTSLELLAYYSRMVATL
STCMKDVSSLLLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLK
ACLDDFSHHNIDVACNLLETCGRFLYRSPETSIRMGNMLEILMRLKNVKNLDPRHSTLVE
NAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDKTTIEHVLRQLRKLPWSDCELYLLK
CFMKVHKGKYGQIHLVASLAAGLSRYHDEFAVAIVDEVLEEIRIGLELNDYGMQQRRVAN
MRFLGELYNYKHADSSVIFETLYLIIVFGHGTPEQDVLDPPEDFFRIRLIITLLETCGHY
FDHGSSKKKLDRFLMHFQRYILSKGALPLDVEFDLQDLFADLRPSMVRYTSVDEVNAALV
ELEEHDRIVSTDKASSEKHSHTDKPLSRSTSTTMVSNGQNNDNGIEENGVQDNVNEGEHD
SGSDVIDAEGHDDEELDEENHDDGGETEDDDEDEDGPASDDEDEVHVRQKVTEVDPLEEA
DFDQELKAVVQESMEQRRLELRGRPTLNMMIPMNVFEGSAKDHHGRGTGGESGDEALDED
TGVSKEVQVKVLVKRGNKQQTKQMYIPSDSSLVQSTKQKEAAELQEKEDIKRLILEYNDR
EEEELNGLGAQPSNWMQSGGNRVGGRGNSFEGTSGRGGGSRHRHHHYYTGGGIYYSRRR
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atggaagataagggtatggatcaaaatgaagatgaatgtcgcaatgaaggtgaaactaac
aacaaacaagatgatgaggaagctgttgctcacctcgaagaaatcaagaaatcgatcgag
gcaaaaatggctttacgtcaaaccaatttgaatcccgagaggcctgacacaggatttttt
aggaccttggattccagcattaaacgcaacactgcagttattaagaaactgaagcagatt
aatgaagagcagcgtgaatcactgatggacgacttgcgaagtgtcaacttaagcaaattt
gttagtgaagcagtggcagctatatgtgaggcaaaacttaggagttctgatatacaagca
gcagttcagatatgctctttgcttcatcaaaggtacaaggattttgtgccaactctgatt
caaggacttctcaaagtcttctctcctggaaaatctggtgatgaaacagattcagacaaa
aacttaaaggcaatgaagaagcgcagctctctgaaacttctattggaacttttttttgtt
ggggttattgaagatggtggtatttttatcagtatcataaaagatcttaccagtgtggaa
cagctgaaagaccgggaagctacgcaaacaagtttgacccttctttctagctttgctcgg
caaggaagaatttttctaggactttctgttactgggccagaaattcatgaagagtttatg
aaaggcctcaacatcacggcagatcaaaagaaagttatcaggaaagcatgttattcgttt
tatgatactgcagcagaactacttcagtctgagcattcttcacttcgattaatggagcat
gaaaattctaagattttgaatgcaaaaggagagctaagcgaagaaaatctctcttcatat
gaaaaacttcgtaaatcctatgaccatttgtaccgtaatgtctcatcattagctgaagca
cttgatatgcagcctcctgtaatgccagaggatggccacacaacaagggttactagtggt
gaggaagctgtttcttctgctgctgggaaagattcttctgttgttgaacctatatgggac
gatgaagacaccagagctttttatgaatgtttacctgatcttagagcttttgttcctgct
gtgcttttgggagaaacggagccaaaagttaatgagcaatctgtgaagggtcaagaccaa
tcaaccgaaatattacctgaatcagacaaaagtcaactggtcacccttgatagtggagag
gtctccacagaatctagcgttttacctgagggagaaagctcagagatagtgaatgataaa
gaagaaaaagaaaagtctaaagagttggacagagacaaggaaaaagaaaaagaaaaagaa
ggtgaaaaaaagggggaacatgaaaaagaaaaactcagaagtcttgaaggaacaaatttg
gatgctctattgcagaggcttccgggttgtgtgagccgggaccttatagatcaattaaca
gtagagttctgttatctaaattcaaaatcaaatcggaaaaagcttgtgagggctttgttc
agtgtaccaaggacttctctagaactgctagcgtattactcacgcatggttgccacactc
tcaacttgtatgaaggatgtctcctcccttctattgcagatgttggaggaggaattcaac
ttcttaataaataaaaaggaccagatgaatattgagacaaagatcaggaatatcaggttt
attggagaactttgcaagttcaaaattgcccctgctggcctggtcttcagttgtttgaag
gcctgtttagatgattttagtcatcacaacattgatgtagcttgcaaccttcttgaaaca
tgtggccgttttctgtatcggtctccagaaactagtatacgtatgggtaacatgttggag
atactgatgcgcttgaaaaatgttaaaaacttggatcctagacatagcactttggtggag
aatgcatactacctttgcaagccacctgaaagatctgcacgagtagctaaagtccgtcct
ccgttgcatcagtatatcagaaagttacttttctctgatcttgacaagacgaccattgag
catgtgctgaggcaacttcgtaaattaccatggagtgattgtgaactgtatcttttaaaa
tgcttcatgaaggttcacaaaggaaagtatggtcagatccacctggttgcatctcttgct
gctgggttaagtcgctatcatgatgagtttgctgtagctatagttgatgaggttttggag
gagattagaattgggttggaactaaatgactatgggatgcaacaaagacgcgttgccaac
atgcgatttttaggagagctttacaactacaagcatgctgactcatctgttatttttgag
acattgtatctcattattgtctttggccatggaacacctgagcaagatgtactcgatcca
cctgaagattttttccgtataaggttgatcattactctacttgaaacttgtggccattac
tttgatcacggctcttctaagaaaaagcttgatcggttcctgatgcacttccaacggtat
attttaagcaaaggtgcactgcctctggatgttgaatttgacttgcaggatctgtttgcg
gacttgcgtcccagtatggttcgttacacttctgttgatgaggtgaatgcagctctagtg
gaacttgaggagcacgaccgaatagtttctactgataaggctagtagtgaaaaacattct
cacactgataagcccttaagtaggagcacttccaccacgatggtcagcaatggacaaaac
aatgataacggcattgaggaaaatggagtgcaagacaatgtcaacgaaggtgagcatgat
tcagggagtgacgtaatcgatgcagaaggacatgatgatgaagagttggatgaggagaat
catgatgatgggggtgagactgaggatgacgatgaggatgaggacggacctgcttctgat
gatgaagatgaagtccatgtgagacagaaggtgacagaagtcgacccattagaagaagct
gattttgatcaggagctcaaggctgtcgtacaggaaagtatggaacagcgacgactggag
ctacggggccgtcctacattgaacatgatgattccaatgaatgtatttgaaggatcagcc
aaggatcatcatgggagaggaactggtggggaaagtggtgatgaagccttagacgaggat
actggcgtaagcaaggaggttcaggtgaaagttctggtgaagcgtggtaataaacaacaa
acgaagcagatgtacatccccagtgattcctcactggtgcagagtacgaaacagaaagaa
gcggctgagcttcaggagaaagaagacattaagaggcttatcttggagtataatgataga
gaagaggaagagcttaatggattgggggcccaaccttcgaactggatgcaaagtggaggt
aacagggttggtggtcgtggcaactcttttgaaggaaccagtggcaggggtggtggatca
cggcatcggcatcatcactactatactggcggtgggatctactatagcagaagaaggtga
DBGET
integrated database retrieval system
