Medicago truncatula (barrel medic): 11423024
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Entry
11423024 CDS
T01716
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
11423024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mtr03041
]
11423024
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
11423024
Spliceosome [BR:
mtr03041
]
Complex C
Other components
Step II factors
11423024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
RRM_DEAH11
KH_DEAH11_1st
KH_DEAH11
Helicase_C
IBR
DEAD
OB_NTP_bind
AAA_22
AAA_19
ResIII
HA2_N
IBR_1
zf-RING_UBOX
zf-C3HC4_2
zf-RING_2
zf-RING_5
zf-C3HC4
ABC_tran
Helicase_RecD
AAA_29
RsgA_GTPase
AAA_30
Motif
Other DBs
NCBI-GeneID:
11423024
NCBI-ProteinID:
XP_003598465
UniProt:
G7IYQ4
LinkDB
All DBs
Position
3:3951098..3959227
Genome browser
AA seq
1731 aa
AA seq
DB search
MKKTFPTTNHRTTTRHDSYLRRQPPWRADHHWNPRFQSNHLYYRPRLPYFIVNLRLTHRL
NLRREEIETLIADCKPNPDKFSFQPNESITASLNFNNGTDAISAVVWFWESRLSECRHEL
SPEFIEMNSDNSKHGDELKARLRSVFMSHVKELMEGKEINRWIKEWDRLSKEIKEVNSLL
GKPFPVRVQDENIDRKKMLDGEKNLVEKRLKEFEYAMENILMYLEENNNNNDDDDDVNVI
RFGERFDWEKICNFIVRERRRLEDGLPIYAYRKEILQQIYHQQITVLIGETGSGKSTQLV
QFLADSGVGANESIVCTQPRRIAAKSLAERVREESGGCYEDSSIKCYSSFSSWNKFDSRI
IFMTDHCLLQHYMSDKNFTGISCIIVDEAHERSINTDLLLALIKNLLSKRVEMRLIIMSA
TADAKQLSDYFYGCGIFRVPGRNFPVEVRYVPSEYEGRSHSSVVDPYVSDVVKMATEIHR
TEKEGTILAFLTSQLDVEWACEKFEAPSAVALPLHGKLSSEEQFHIFKNYPGKRKVIFST
NVAETSLTIPGVKYVIDSGLVKDSRFDPSSGMNVLKVCWISQSSAKQRAGRAGRTEPGRC
YRLYSEADYQSMETNQDPEIRRVHLGVAVLKILALGVKNVQDFDFVDAPSTSSIERAIGN
LIQLGAIKLNNDVYELTPEGRRLARMEIEPRLGKLILGCFQYTLGREGIALAAMMANARS
VFCRVGNEGDKQKSDCQKVQFCHCEGDLFTLLSVYMEWEVQPQNWKNKWCWENSINAKSM
RRCQNTFLELESCLESELGLVVPSYWRWDPHNPSIHDKNMKKAILSSLSENVAMYSGRNQ
LGYIVAQTEKHVQLHPSCSLLVFSQRPSWVVFYELRSESNEYLFCVSAVDFQSLYSLKPP
PLFDVSKMEEQKLQTKTLVGFGKHVLKRFCGKGNLLGHVSRIRKACMDERIFVDVNFDEN
HIQLYACSNDMNTASKLVNDVLQYEKKRLHTECMEKCLYHGFGSSSPVAMFGSGAEIKHL
ELEKLPLSVDVFHPNVNAIDEMELLMFFEKNTSGCICDMQKFTGMVKDVEDKAKWGKITF
MTSNAAKRAAELDGEEFCGSPLKIVHSQSAMGGDTTFSFPAVEARISWLRRPIKAVGIIK
CDKNDVDFIIRDFENLIVDGRRYVRCAPSDKYLDNILITGLDKEVPETKILDILRSATSR
RILDFFFKRGDAVENPPCSMIAETILKEISPLMPKKKPHISSCRVQVFPPKPKDYSMNAL
IHFDGRLHLEAAKALEKIDGKVLPGFHSWQKIKTQRLFHSTLIFSPPVYHVIKGQLEKVL
ARFNNLEGLEWKLDITPNGSHRVKITANATKTVAEGRRLLEELWRGKVIVHDNLTPATLQ
PILSKDGSSLTSSIQKATSTYIQFDRRNMKLRIFGSPDKIALAEKKLIQSLLSLHDEKQS
VICLSGRDLPSDFMKQVVKNFGPDLHGLKEKVPGADLRLNTRNRTILCHGNSELKSRVEE
ITFEIARLSNPSSERFDTGPSCPICLCEVEDGYQLEGCGHLFCQSCMVEQCESAIKNQGS
FPIRCAHQGCGNHILLVDFRTLLSNDKLEELFRASLGAFVASSSGTYRFCPSPDCPSIYR
VADPDTASAPFVCGACYSETCTRCHIEYHPYVSCERYRQFKDDPDSSLRDWCKGKEQVKN
CPACGHVIEKVDGCNHIECKCGKHICWVCLEFFTTSGECYSHMDTIHLGVD
NT seq
5196 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaacctttcccaccaccaaccaccgcaccaccacccggcatgactcttatctc
cgccgtcaaccaccgtggcgagctgaccatcactggaaccccagattccaatccaaccac
ctctattatcgcccccgcctcccctatttcatcgtcaacctccgcctcacccaccgcctt
aacctccgccgtgaagagatcgagaccctgatcgccgattgcaaaccaaatcctgacaaa
ttttcattccaaccaaacgaaagcatcactgcttctctcaatttcaataacggaacagat
gcgatcagcgccgtcgtttggttctgggaatcacgtttatcagaatgccgtcacgaatta
tcgcccgagttcatcgaaatgaactccgacaattccaaacacggagacgaactcaaagct
cgtctccgaagcgtattcatgagccatgtgaaagaactaatggaaggaaaagaaataaac
cgttggataaaagaatgggatcgtttatcaaaagagattaaagaagttaatagcttatta
ggtaaaccttttccagttagggttcaagatgagaatattgatagaaaaaaaatgcttgat
ggtgaaaaaaatttggttgagaaaagattaaaggaatttgaatatgctatggagaatatt
ttgatgtatttagaagaaaataataataataatgatgatgatgatgatgttaatgtgatt
aggtttggtgaaaggtttgattgggagaagatttgtaattttattgttagggaaaggagg
agacttgaagatggtttgcctatttatgcttataggaaggaaattcttcagcaaatatat
catcaacagataacagtgttgattggagagacaggttctgggaagagtactcaattagtg
cagtttcttgctgattcgggtgttggggccaatgagtcaattgtgtgcactcagcctcgc
aggattgctgcaaaatcattggctgaaagggtccgggaagaaagtggtggatgttatgaa
gacagttcaatcaagtgttattcttcattttcatcttggaacaagttcgattccaggata
atcttcatgacagatcattgtttattgcagcactacatgagtgataaaaattttactggg
atttcgtgtattatagtggacgaggctcatgaaaggagtataaatactgatttactgttg
gcattgataaagaatttactttctaagagggttgaaatgcggcttatcatcatgtctgcc
acagctgatgcaaagcagttatctgattacttctatggttgtggaatttttcgtgtgcca
gggagaaacttccctgtggaggtgagatatgttccatctgaatatgaaggacgatctcat
tcttctgttgtggacccttatgtttccgatgttgttaaaatggcaactgaaattcataga
acagagaaagaaggaactattcttgcctttcttacatcacagttagatgtagaatgggct
tgtgaaaagtttgaagccccctctgcagtagctttgcccttgcatggaaaactttcgtct
gaagagcaatttcatattttcaagaactatcctggaaaaagaaaagtgatattttcaacg
aatgtcgcagagacatcacttacaattcctggtgttaagtatgtgatagattctggattg
gttaaagatagtcgttttgatcctagcagtgggatgaatgtacttaaggtttgctggatc
agccagagttctgctaagcaacgggctggtcgtgctgggaggaccgagcctggtagatgc
tatagactgtactcagaagctgattatcagtctatggaaacaaatcaagatcccgaaatt
cgaagagttcatcttggcgtagcagttttgaagatccttgctttaggggtgaagaatgtc
caggatttcgattttgtggatgctccatccactagctctattgagagggcaatcgggaat
ctaattcaattaggagccattaaactcaacaatgatgtttatgaattaactcctgaaggt
aggcgcttagcaagaatggagattgaacctaggcttggtaaactcattcttggttgtttc
caatataccttgggtagggaaggcattgccctagctgccatgatggccaatgctagaagc
gtattttgcagagttggtaatgaaggtgataagcaaaaatctgattgtcagaaagtgcaa
ttttgccattgcgagggtgacctttttactcttctctctgtgtacatggaatgggaagtc
cagcctcaaaattggaagaataaatggtgttgggaaaacagcatcaatgccaaatctatg
aggagatgccaaaacacatttttggagttagaatcttgcctagagagtgaacttggcctt
gttgttccaagttactggcgctgggaccctcataacccttctattcacgataagaacatg
aaaaaggctatactgtcctcactttctgaaaatgtagccatgtactctggacgcaatcaa
cttggttacatagtagctcaaacggagaaacatgttcaactacatccatcttgttccttg
cttgtattttcccagaggcctagttgggtggttttttatgagcttcgttcagagtctaat
gaatatttgttctgtgtgagtgctgttgactttcaatcattatacagccttaaacctcct
cccttgtttgatgtatccaagatggaagagcagaagttgcaaacaaagacgctggttggt
tttggcaaacatgttctcaagagattttgtgggaaaggaaatttgctcggtcatgtttct
cgtattaggaaagcttgtatggatgaaagaatatttgttgacgtgaattttgacgagaac
cacattcagttgtatgcctgttccaatgatatgaatacagctagtaagctggtgaatgat
gttttacaatatgagaagaagaggttacacactgaatgtatggaaaaatgtttgtatcat
gggtttggttcctcatcacccgtggctatgtttggctctggtgctgagataaagcatttg
gaacttgagaagcttcccttgagtgttgatgtgtttcacccaaacgtaaatgcaattgac
gaaatggagctcctgatgttttttgagaaaaatacttctggttgtatatgtgacatgcaa
aagttcacaggcatggtgaaagatgttgaggataaagcaaaatggggcaagataacattt
atgacctccaatgctgccaaaagagctgctgagctggatggagaagagttttgtggttcg
cccctaaaaatagttcattcacagtcagctatgggaggggatacaacattttcatttcct
gcagttgaagcaagaatttcttggcttcgtaggcctatcaaagcagttggcataatcaaa
tgtgataaaaatgacgtggatttcatcattagagattttgaaaacctcatcgtagatgga
agaaggtatgttcgttgtgctcccagtgataagtatttggacaacattcttataactggg
cttgacaaagaggttcctgagactaaaattttggatatactaagatctgctactagtaga
aggattctagattttttctttaagagaggagacgctgttgaaaatccaccatgcagtatg
attgcagagacaatattaaaagaaatctcccccttaatgcccaaaaaaaaacctcacatt
agttcttgccgtgttcaggtgtttccacctaagccgaaggattattcgatgaatgcttta
attcattttgatggaagattacatttagaagcagcaaaagctttggagaaaattgatgga
aaggtgttgcccggatttcattcttggcagaagataaagacccagcgtttgtttcacagc
accttgatattttctcctccagtgtatcatgtgattaagggacaactggaaaaagtgctg
gcacgtttcaacaatttagaaggtcttgagtggaaactagacataactcctaatggctcc
caccgagtgaaaataacagccaatgccacaaagacggtggcagaaggtaggagacttctg
gaagaactgtggagagggaaagtcattgtccacgacaacctcacccctgccactctacag
cccatattgtccaaagatggttctagtcttacaagctcaatacagaaagcgacttcaact
tacattcaatttgataggcgcaacatgaagttacggatatttggttcgccggacaagatt
gctttggctgagaaaaagttaattcaatctctcttgtccctccatgacgaaaaacagtca
gtaatctgtctgagtggaagggacctaccttctgattttatgaagcaagtggttaagaat
ttcgggccagatcttcatggactaaaagagaaggtacccggggcagatcttaggcttaac
acacgcaaccggacaatcctttgtcatggtaactcggagttgaaatcaagagtggaggaa
ataacttttgagattgcacgtttaagcaatccttcaagcgagagatttgacactggacct
agttgcccaatttgcttgtgtgaggttgaggatggatatcagcttgaaggttgtggtcat
ttgttctgccagtcatgtatggtggagcagtgtgaatctgctataaaaaaccaaggcagt
ttcccaatacgttgtgctcatcagggctgtggaaatcatattttgcttgtagatttcaga
actctcctgtcaaatgataagttggaagaacttttcagggcttctttgggagcttttgta
gcctcaagttcaggaacctataggttttgtccatctcctgactgcccctcaatctataga
gttgcagatcccgacacagctagtgcgccatttgtttgtggggcatgttattcagagact
tgtaccaggtgccatatagagtatcatccgtacgtttcatgtgagagataccgacaattc
aaggatgacccggattcttctctgagggattggtgcaaagggaaagaacaagttaagaat
tgcccggcatgtgggcatgtaattgagaaggtagatgggtgcaatcacattgagtgcaag
tgtggaaaacatatttgctgggtttgcttagagttctttacaaccagcggtgaatgttat
agccatatggatactatacacttgggcgtagattaa
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integrated database retrieval system
