Medicago truncatula (barrel medic): 11423046
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Entry
11423046 CDS
T01716
Name
(RefSeq) oligouridylate-binding protein 1B
KO
K13201
nucleolysin TIA-1/TIAR
Organism
mtr
Medicago truncatula (barrel medic)
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11423046
03041 Spliceosome [BR:
mtr03041
]
11423046
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
11423046
Spliceosome [BR:
mtr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
11423046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_7
Phage_TAC_14
RRM_DEAH11
Motif
Other DBs
NCBI-GeneID:
11423046
NCBI-ProteinID:
XP_003627354
UniProt:
G7L8A9
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All DBs
Position
8:7654015..7659665
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AA seq
427 aa
AA seq
DB search
MQNHRLMKQQQHQHQQQQQAMMQQAALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPST
CRSVYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLN
GRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMW
DQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDSKS
VVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVR
VQRDKGFGFVRYSTHAEAALAIQMGNAQSYLCGKIIKCSWGSKPTPPGTASNPLPPPAAA
PLPGLSATDILAYERQLAMSKMGGVHAALMHPQAQHPLKQAAIGASQAIYDGGFQNVAAA
QQMMYYQ
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgcagaatcataggctgatgaagcaacagcaacatcagcatcaacaacaacaacaagct
atgatgcaacaagctgctcttcttcaacaacagtctctctatcaccctggtctcttagct
ccacctcagattgaaccaatcccaagtggaaatttgcctcctggttttgatccaagtact
tgccgcagtgtgtatgtgggcaacgtccatacacaagtaaccgagccacttctgcaagaa
gtttttgcgggtactggcccagttgaagggtgtaaactttttaggaaagagaagtcatcc
tatggattcattcattacttcgatcgcagatctgctgctctggccatattaactctcaat
ggaaggcatctattcgggcaacctatcaaagttaactgggcatatgccagtggtcagaga
gaggatacatcaggccattacaacatatttgttggtgacctcagtcctgaggttaccgat
gctacacttttcgcatgcttttctgtctaccaaagttgttcagatgcaagagttatgtgg
gatcagaagactgggcgttcaaggggatttggatttgtttcattccgtagccagcaggat
gctcaaagtgctataaatgatttgaccggtaagtggcttggaagtagacaaatacgctgc
aactgggcaacaaaaggtgctggcggcattgaagagaagcaaaactcagacagtaaaagt
gtggtggaactaacaaatggttcatctgaggatggtaaagagatatctagcaatgatgtt
cctgagaacaatcctcaatatacaactgtttatgtcggtaaccttggatcggaggcaaca
cagcttgatctccatcgtcatttccatgcccttggggctggtgtgatagaggaagttcgt
gtccagcgtgataaaggatttgggtttgtgagatatagtactcatgctgaagcagctctg
gcaattcagatgggaaatgcccagtcttatctctgtggcaaaattattaagtgctcctgg
gggagcaagcccactccacctggaactgcttcaaatcctcttccaccacctgctgctgcg
cctctgccaggcctatctgcaaccgatattttggcatacgagcggcagctagcaatgagc
aagatgggtggagttcatgctgcgttgatgcatccccaagcacagcatcctcttaagcag
gctgcaattggagcaagccaggcgatatacgacggcgggttccaaaatgttgctgctgca
cagcaaatgatgtattatcagtaa
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