Medicago truncatula (barrel medic): 11423056
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Entry
11423056 CDS
T01716
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
11423056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mtr03400
]
11423056
DNA repair and recombination proteins [BR:
mtr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
11423056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
Motif
Other DBs
NCBI-GeneID:
11423056
NCBI-ProteinID:
XP_003605072
UniProt:
G7JDE1
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Position
4:8492969..8499702
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AA seq
683 aa
AA seq
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MARNKEALLLLLDVGPSMHPVLPEVEKVCSMLVQKKLIYNKYDEVGIVLFGTEDTDNELT
TEVGGYQHVVVSKNSKVVDGDIVEALQQLPRGTTDGDFLDAVIVAMDMLIKKFGDTNKGK
KRLCLITNAQCPIKDPYEGSKEEQVTTIAKQMTAHGMKMESIIVRGKLSQDANKEIMDEN
DRLLNIFSKETQTRLLYVEDPISLFGALKTRNITPVTVFRGDLELSPKLRIKVMVYKKTQ
EEKFPTLKKFSDKAPQTDKFATHEVKVDYEYKSSADPDKVVPPDQRIKGYRYGPQIIPIS
SAEWDAVKFKPEKGVKLLGFTDSSNILRHQYMKDVYVFIAEPGNTKAVLAVSALSRAMKE
MNKVAILRCVWRQGQANVVIGVLTPNVSDRENLPDSFYFNILPFAEDVREFQFPSFSSFP
ASCQPNEQQLESAANFIKMLDLAPDGKQEVLLPDFTPNPVLARFYHYLDLKSKHPDASVP
PLDYTLRKITEPETDLVLQNQSVIDSYRRSFEMQGNPLKKPRRFLRGKTSDEEGKENITA
PPANLIEYTSIKVEKIGDLTPVQDFEAMISRRDSPDWVVKAIKDMKDKIFDMVEDSHEGD
NYPKALDCLVALRKGCILEQEPKQFNDFLKHLCNFCQEKNLQSFCEHLAAKGLTLIPKTE
AIDSDVSDEEARSFLVKSESKCD
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtaacaaggaagctttgcttttgctgcttgatgtgggcccatccatgcatcct
gttcttcctgaagttgagaaagtctgttccatgcttgttcagaaaaagttgatttataac
aaatatgatgaagtggggattgtattatttggaacagaagacacggataatgaattaact
acagaagttggtggatatcagcatgttgtggtttcgaaaaattctaaagttgtggatgga
gacattgttgaggctttacaacaactgcctcgaggaactactgatggtgattttcttgat
gctgtcattgttgccatggatatgttaataaaaaagtttggagacactaacaaaggaaag
aaacgtctttgccttattacaaatgcacagtgtccaataaaagatccttatgaaggatca
aaagaagagcaagttaccacgattgctaaacaaatgacagctcatggtatgaaaatggaa
agtataattgtacgaggaaaacttagtcaagatgcaaacaaggagataatggatgagaat
gatcgtcttttaaatattttttccaaggaaacacagacaagattgttgtatgttgaggat
ccaatttctttgtttggtgctcttaaaactcgaaatataactccagtgacagttttcaga
ggggatcttgaattgagcccaaaactgaggattaaggtaatggtgtacaagaaaacacaa
gaagagaaatttccaactctgaagaaattctctgataaggctcctcaaactgataaattc
gcaacacatgaagtcaaagtagattatgagtacaagagttccgcagatccggataaagtt
gtccctccagatcaaagaattaaaggttatcgatatgggcctcaaataattcctatttcc
tctgctgaatgggatgctgtaaagttcaaaccggaaaagggtgtgaagcttttgggattt
actgattcttctaatatattgagacaccaatacatgaaagatgtctatgtgttcatagct
gaaccggggaatacaaaggctgtactggcagtttctgcactatcaagggctatgaaggaa
atgaataaggttgcaattttacggtgcgtctggagacagggacaagcgaatgttgttatt
ggggtcttgacacccaatgtatctgatagagaaaatcttcctgattcattttacttcaat
attcttccttttgccgaggatgtgcgtgagtttcagtttccttctttcagtagtttccca
gcatcgtgccagccaaatgaacaacaactagaatcagcagctaacttcataaaaatgctt
gatcttgcaccagatgggaaacaggaagttttgcttcctgactttaccccaaatccagta
ctggcgcgcttttatcattatcttgatctgaaatcaaagcatccagatgcttcagtgcca
cctctcgattatacactcaggaaaattacagaacctgagactgacttggttttgcagaac
caatctgtcattgactcatatcgtagatcttttgagatgcagggaaatcccttgaaaaag
ccaaggcgttttttgcgaggaaagacaagtgatgaagagggtaaagaaaacatcacagcc
ccgcctgccaatctcatcgaatatacgtctattaaagttgagaaaatcggggatctgact
cctgtccaagattttgaagccatgatttcacgccgagacagtccagattgggttgtaaaa
gcaatcaaggatatgaaagataaaatatttgatatggtggaggactcccatgaaggtgat
aactatcccaaagcactggactgtttagttgcgcttcgcaaaggttgcatacttgagcag
gaaccaaaacaattcaacgatttccttaaacatctttgcaatttctgccaagagaaaaac
cttcaaagtttctgcgaacatcttgctgctaagggactcacattgatccccaaaacagaa
gctatagacagtgatgtcagtgatgaagaagccagaagtttcttggtaaagtctgaatcc
aaatgtgattaa
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