Medicago truncatula (barrel medic): 11423131
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Entry
11423131 CDS
T01716
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
11423131
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mtr03041
]
11423131
Spliceosome [BR:
mtr03041
]
Complex C
Other components
Step II factors
11423131
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_SPT8
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_NWD2_C
WD_LRWD1
eIF2A
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_SCAP
Beta-prop_WDR75_2nd
Motif
Other DBs
NCBI-GeneID:
11423131
NCBI-ProteinID:
XP_024636090
LinkDB
All DBs
Position
1:36200335..36205644
Genome browser
AA seq
584 aa
AA seq
DB search
MDLLNQYTDNNNDPDSPSQNPNSPENSPPRLLPSRSAAPKVDDTMLALTVADPKTLSKPI
DPTQHLIAFNPTYDQLWAPIQGPSHPYAKDGLAQGMRNHKLGFVEDANIEPFLFDEQHNT
FLKFGYAADPSASNYVGDFDALQKNNAASVYNIPHREQKKRKIESLKKKEDNDNEEDESN
NDKQGAEIENPASEAWLLKNKKSPWAGKKEGLQGELTEDQKKYAEEHAKKKGEEKSGFGG
EKVEAVTDKSTFHGKEERDYQGRSWIAPPKDAKASNDHCYIPKRLVHTWSGHTKGVSAIR
FFPNSGHLILSAGMDTKVKIWDVFNTGKCMRTYMGHSKAVRDICFTNDGTKFLSAGYDKN
IKYWDTETGQVISTFSTGKIPYVVKLNPDEDKQNVLLAGMSDKKIVQWDMNTGQITQEYD
QHLGAVNTITFVDNNRRFVTSSDDKSLRVWEYGIPVVIKYISEPHMHSMPSISLHPNANW
LAAQSLDNQILIYSTREKFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFW
DWKSCKVFRTLKCHEGVTIGCEWHPLEQSKVATCGWDGLIKYWD
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atggatctactcaaccaatacaccgacaacaacaacgatccagactcaccatctcaaaac
cctaattcaccggaaaattctccaccccgtctcctcccttcccgttccgccgcccccaaa
gtagacgacaccatgctcgctctaaccgtcgccgaccccaaaaccctctccaaacccatc
gacccaactcaacaccttatcgccttcaaccctacctacgaccagctctgggccccgatt
caaggtccatctcacccttacgctaaagacggtttagcacaaggtatgcgtaaccacaag
ctcggttttgttgaagacgctaatatcgaacctttcctctttgatgaacagcataatacc
tttttaaaattcggttatgctgctgatccgtctgcttcgaattatgtcggtgattttgat
gctttgcagaagaataatgctgcttctgtttataatatcccacaccgtgaacagaagaag
cggaaaattgaatctcttaagaagaaagaagacaatgataacgaagaagacgaaagtaac
aacgacaaacagggtgctgagattgagaatccagcttctgaggcgtggttgttgaagaat
aagaagagtccttgggctgggaagaaggaaggtttacaaggagagttaactgaagatcag
aagaaatacgctgaggagcacgcgaagaagaaaggcgaagaaaaaagtggttttggtggt
gagaaagttgaggctgttacagataagagtacctttcatgggaaagaggaaagggattat
caaggtaggtcttggattgcgcctccaaaagatgcaaaagcgagtaatgatcattgttat
ataccgaagagattggtgcatacttggagtggacatacgaaaggggtttccgctattagg
ttttttccgaattcgggtcatttgattctatctgctggtatggatactaaggtcaagatt
tgggatgttttcaatactggcaaatgtatgaggacttatatgggtcattcaaaagctgtt
agggatatttgttttaccaatgatggaactaagtttttgagtgccggttatgataagaat
attaagtattgggacaccgaaacggggcaggttatatcaactttctccactgggaagatt
ccttatgttgtgaagcttaacccggacgaggataagcagaatgttttgttggctggtatg
agtgataagaagattgttcagtgggatatgaatacagggcagatcactcaagagtatgat
caacatttgggggcggtgaataccattacttttgttgataataatcggagatttgttact
tccagtgatgacaagtccctcagggtctgggaatatggcattcctgtggttataaagtat
attagcgagccacacatgcattctatgccttccatttcgcttcaccccaacgcaaattgg
ctcgccgcgcagagtttggataaccagatacttatttatagcacaagggagaagtttcaa
cttaacaaaaagaagaggtttgctggacatattgttgctggatatgcttgtcaggtaaat
ttttcgccggatggtcgttttgtcatgtcgggagatggtgagggtaagtgttggttctgg
gactggaagagttgcaaagtcttcagaactctcaagtgtcatgaaggcgttaccattggt
tgcgagtggcatcctctggaacagagcaaagtagcaacatgtggctgggacgggttgata
aagtactgggactag
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integrated database retrieval system
