Medicago truncatula (barrel medic): 11423776
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Entry
11423776 CDS
T01716
Name
(RefSeq) polygalacturonase At1g48100 isoform X1
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr00040
Pentose and glucuronate interconversions
mtr01100
Metabolic pathways
Module
mtr_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
11423776
Enzymes [BR:
mtr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
11423776
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
NosD
DUF1565
Motif
Other DBs
NCBI-GeneID:
11423776
NCBI-ProteinID:
XP_003618193
UniProt:
G7KHJ9
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Position
6:879121..883271
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AA seq
425 aa
AA seq
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MKTMNINTITLIITTAFLVLFSCLERCSATRGHSWRKLKATSSTFNVLDFGAKGDGHSDD
TKAFEDAWAAACKMEASTMVVPSGSVFLVKPISFSGPNCEPNIVFQLDGKIIAPTSPSAW
GSGTLQWLEFTKLNKITIKGKGVIDGQGSVWWNDSEKLPKTKPTALRFYGSDGVSVSGIT
IQNSQQTHLKFDSCTNVQVFDITTSSPGDSPNTDGIHLQNSQDVVISGSTLSCGDDCVSI
QTGCSNILVHNVNCGPGHGISIGSLGKENTKACVSNVTVRDVTLQNTLTGVRIKTWQGGS
GSVQNIMFSNIQVSDVKTPIMIDQFYCDGGKCRNVTSAVAVSSIHYTNVHGTYTKEPIYF
ACSDSLPCKGITLDTIKLESSQNSNVPFCWKAYGELKTEIVPPVDCLQRGNPSSGGITSN
KESSC
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgaagactatgaacataaacactattacattgatcattaccactgcttttttggtttta
ttttcatgtcttgaaagatgcagtgccacaagaggccacagttggaggaaactcaaagct
acctcttctactttcaatgtattagattttggagctaaaggtgatggacattctgatgac
acaaaggcctttgaagatgcatgggcagctgcttgtaagatggaggcatcaacaatggtt
gttccatccggttctgtttttctagtaaaaccaatttcattctctggccctaattgtgag
cctaacattgtttttcagctggatggaaaaatcattgctcctacaagtccttcagcttgg
ggctcaggtactttgcaatggcttgagttcactaagctaaacaagattacaattaaaggc
aaaggtgtcattgatggtcaaggctctgtttggtggaatgatagtgagaaactaccaaaa
accaaaccaacggcactaaggttctatggaagtgatggtgtaagtgtgagtggtataacc
attcaaaacagtcaacaaacccatctcaaatttgattcatgcacaaatgttcaagtcttt
gatataacaacttcatcacctggtgatagtcctaacacagatggaattcacctacaaaat
tctcaagatgtggtcatatctggcagcacacttagttgtggggatgattgtgtgtctata
caaactggttgttctaacatattggtgcacaatgttaattgtggaccaggtcatggaatt
agtatcggaagtctcggaaaagagaacaccaaagcttgtgtttccaatgtcaccgttcgc
gatgttactctccagaacaccttgactggggtgagaatcaaaacatggcagggaggctca
ggctcagtccaaaacatcatgttctcaaacattcaagtttctgatgtaaaaactccaata
atgattgatcaattctattgtgatggtggaaagtgtcgtaatgtaacatcagctgtggca
gtatcaagtatacattatacaaatgtacatggaacttacactaaagaacctatttatttt
gcatgtagtgatagcttaccttgtaaaggtataacccttgatacaataaagcttgaatca
agccaaaactccaatgttcctttttgttggaaagcatatggtgaattgaaaactgaaatt
gttcctcctgttgattgtcttcaaagagggaatccatcaagtggtggaatcacttctaac
aaagaaagttcttgctga
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