Medicago truncatula (barrel medic): 11424192
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Entry
11424192 CDS
T01716
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
11424192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtr03021
]
11424192
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11424192
Transcription machinery [BR:
mtr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
11424192
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
11424192
U7-dependent histone pre-mRNA processing factors
11424192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Mur_ligase_C
Motif
Other DBs
NCBI-GeneID:
11424192
NCBI-ProteinID:
XP_003592965
UniProt:
G7IPE5
LinkDB
All DBs
Position
2:complement(494059..498055)
Genome browser
AA seq
690 aa
AA seq
DB search
MSSVKKRESNGGTINRETEDQLIVTPLGAGNEVGRSCVYMTYKGKTVLFDCGIHPGYSGM
AALPYFDEIDPSTVDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDY
VKVSKVSVDDMLYDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIA
GVRVLYTGDYSREEDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTI
SQGGRVLIPAYALGRAQELLLILDEYWANHPELQNIPIYYASPLAKKCLTVYETYTLSMN
DRIQNAKSNPFAFKHISALSSIDIFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNSC
VIPGYVVEGTLAKTILNEPKEVTLMNGLSAPLHMQVHYISFSAHADSAQTSAFLEELNPP
NIILVHGAANEMGRLKQKLMTQFADRNTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKTP
EVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYSGAFCVIQSRLKQIYE
SVEPSVDEESGVPMLLVHDRVTVKHESEKHVSLHWASDPINDMVSDSVVALVLNINRDLP
KIVAESDATKIEEENEKKTEKVMQALLNSLFGNVKVGENGKLIINIDGNVAELNKESGEV
ESENEGLKERVRTAFRRIQSSVKPIPLSAP
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgagttcagtaaagaaacgcgaatcaaacggtggtaccattaacagagaaaccgaagat
caattgatagtaacaccattaggagctggaaacgaagtaggtagatcatgcgtttacatg
acctacaaaggaaaaaccgttttattcgattgcggtattcatcctggttactccggcatg
gcggcgcttccttacttcgatgaaatcgatccttcaactgtcgacgttcttctcattact
cattttcatttggatcacgccgcttctcttccttattttctcgagaagactactttcaaa
gggagagttttcatgacttacgctacgaaagcaatttataagcttcttttgtctgattat
gttaaagtcagtaaggtttctgttgatgatatgctttatgatgaacaagatattaatcgc
tccatggataaaattgaggttattgatttccatcaaacggttgaagtgaacggtatcaga
ttctggtgttacactgcaggccatgtccttggtgctgctatgtttatggttgacattgct
ggtgttcgagtgctgtatacaggagactattcacgcgaggaagacagacatcttcgagct
gcagagaccccacagttctcccctgatgtctgcattatagaatccacctatggtgtacaa
caccatcagcctcgccacacccgagaaaaacgctttactgatgttattcattcgaccata
tctcaagggggccgtgtgttgattccagcttatgccctcggtcgtgcgcaagagctactg
ttgatccttgatgagtattgggcaaatcatccggagctccagaatatacccatctattat
gcttctcctcttgcaaaaaaatgtttgactgtttacgagacttacaccctttcaatgaat
gacaggattcagaatgcaaagtcaaatccatttgcctttaagcacatatcagctttgagt
agcattgatatttttaaagacgtaggaccatctgttgtgatggcgagccctggtggactt
cagagtgggttgtcgcgacaattatttgatatgtggtgctctgacaagaaaaattcttgt
gttatacctggatatgttgttgaggggacactggcaaaaaccatcctcaatgaaccaaag
gaagttactctgatgaacggactctctgcacctctccacatgcaggtgcactacatttcc
ttttctgctcatgctgactctgctcaaacaagtgcattcttggaagagctcaatccgcct
aacataattcttgtccacggggcagctaatgagatggggaggctcaagcagaagctcatg
actcagtttgctgatcgtaacaccaagatcctcactccaaaaaactgccagtctgttgaa
atgtattttaattcacagaaaatggcaaaaaccattgggaagctggctgaaaaaacaccg
gaagtgggtgaaaccgttagtggtttgctagttaaaaaaggttttacatatcaaataatg
gcaccagatgatctccatgtcttctcgcagctatcaacggcgaatgtcactcagagaatt
accatcccttattcaggcgccttttgtgtcatacagagtagactcaaacagatatatgag
agtgtggagccgtcagtcgatgaagaatctggagttccaatgttgctagttcatgaccgc
gtaacagttaagcatgagtctgagaagcatgtctccttgcattgggcgtcagaccccatt
aatgacatggtatcggattcagttgttgctctagttttaaatatcaaccgtgatctccca
aaaatagtggccgaatcagatgccacaaaaattgaggaagagaacgagaagaagacagag
aaggttatgcaggccctcctcaattcactctttggaaatgtgaaggttggagaaaatggg
aagctgataattaacattgatggcaatgtggcagaactcaacaaagaaagtggcgaagtt
gagagtgaaaatgaaggccttaaagaaagagtgagaactgcattccggcgtattcaaagt
tccgtgaagccaattcctctttctgcgccatag
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