Medicago truncatula (barrel medic): 11424426
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Entry
11424426 CDS
T01716
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
11424426
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11424426
03012 Translation factors [BR:
mtr03012
]
11424426
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
11424426
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
11424426
Translation factors [BR:
mtr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
11424426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
Rad17
nSTAND3
T2SSE
AAA_19
NACHT
Motif
Other DBs
NCBI-GeneID:
11424426
NCBI-ProteinID:
XP_003590323
UniProt:
G7I8I8
LinkDB
All DBs
Position
1:28638174..28648868
Genome browser
AA seq
1036 aa
AA seq
DB search
MLHSLLRPNFHSHHFFFIHPHAPKLLLSNLPISTSLIMSYRPNYQGGGRRGNSSSSNRGG
GRRGGGGGGRGGGGRGEQRWWDPVWRAERLKQQQAEKEVLDEKEWWKKIETMKRGGEQEL
VIKHYFSIADQQTLADMAYQHELYFHAYNKGKTLVVSKVPLPDYRADLDERHGSTQKEIK
MSTDIERRVGNLLNNSQSTSQSTATAAASLPSASTDTGHKKTMTTINSASSQQTDTSKEK
LSVALKERQELEQASGSLKEMKSFREKLPAFKMKSEFLKAVQGNQVLVVSGETGCGKTTQ
LPQFILEEEISCLRGADCNIICTQPRRVSAISVAARISAERGETLGKTVGYHIRLEAKRS
AETRLLFCTTGVLLRQLVQDPELTGVSHLLVDEIHERGMNEDFLIIILRDLLPRRPDLRL
ILMSATINADLFSKYFANAPTMHIPGFTFPVVEHFLEDVLEKTRYSIKSESDDIEGNSRR
RKKQQDSKKDPLAEMFEDVDIDTHYKSYSSGVRKSLEAWSGSQIDLGLVEATIEYICRNE
GGGAILVFLTGWDEISKLFEELEKNYLLGNRSKFLILPIHGSMPTIDQCEIFDRPPPNKR
KIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLASLLPSWISKASARQRRGRAGR
VQPGVCYRLYPKLIHDAMPEYQLPEILRTPLQELCLHIKSLQLGTAAPFLGKALQPPDSL
AVQNAIELLKTIGALDNKEELTPLGRHLCTVPLDPNIGKMLLMGSIFQCLSPALTIAASL
AYRNPFVLPINRKKEADEAKRYFACDSRSDHLALVEAFEEWKDAKSRGDEKNFCWENFLS
PATLRLIDDMRTQFLNLLSDIGFVDKSKGVQAYNQQSHDLEMVCAILCAGLYPNVVQCKR
RGHRTAFYTKEAGKVDIHPSSVNAGVHSFPLPYLVYSEKVKTTSIYIRDSTNISDYALLL
FGGNLDPSKNGEGIEMLGGYLHFSASKSVIELIKKLRGELDKLLNRKIEEPGFDISDEGK
AVVAAAIELLHNQVMQ
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgcttcactcccttctccgacctaactttcactctcatcacttcttcttcatacacccc
cacgcacccaaacttctactctccaaccttccaatctccacttctctcataatgtcctac
cgccctaactaccaaggcggaggccgcagaggcaactcctcatcttccaatcgcggcggt
ggccgccgtggaggtggcggcggtggccgtggtggtggtggacgcggtgaacagagatgg
tgggaccctgtttggcgtgctgagcgccttaaacaacaacaagcagagaaggaggtgctt
gatgagaaagaatggtggaaaaagatagaaacgatgaaaagaggaggggaacaagaattg
gttataaagcactacttcagtattgcagaccagcaaaccctagctgatatggcttatcaa
catgaactatacttccatgcatataataaagggaagactcttgttgttagcaaagttcct
ttgcctgattaccgtgcagaccttgatgagcgtcatggatcaacacagaaggagatcaaa
atgtccacagacatagagagaagagtaggaaatcttttaaataactcacagtcaacctca
cagtcaacggctacggcagctgctagtttgccttctgcatcaactgatacgggacataaa
aaaacaatgaccactataaactctgcttcttcacaacagactgatacttcaaaagagaaa
ctcagtgttgcactcaaggaaaggcaggaactggagcaggcaagtggtagtttgaaggaa
atgaaatcatttagggagaagcttcctgcatttaaaatgaagtctgagtttctgaaagca
gttcaaggaaatcaggtattggtagtttcgggagagacaggctgtggcaaaacaacacag
ctgccacagttcattctggaagaagaaatatcttgtttgcgtggagctgactgcaacata
atctgtactcagcctcgtcgtgtgtctgcaatctctgttgcagctcgtatttctgctgaa
aggggagaaactcttggcaaaactgttggataccacatccgtcttgaagcaaaacgttct
gcggaaacacgccttcttttctgcaccactggtgtattactgcggcaactggtacaagat
ccagagttgactggtgttagtcatttgctggtggatgaaattcatgaaagaggcatgaat
gaagacttcttaataataattttacgcgaccttcttcctcggcgtccagatttacgcctc
attctaatgagtgccacaatcaatgctgatttgttctctaaatactttgcaaatgcccca
acaatgcacataccgggatttactttccctgtggtggagcatttcctagaagatgtgttg
gagaaaactagatatagcatcaagtcggagtctgacgatattgaggggaattcaaggaga
agaaagaaacaacaagattctaagaaggatcctttggctgaaatgtttgaggacgttgat
atagatactcattacaaaagttacagctcgggtgttagaaaatctcttgaagcttggtca
ggttcacagattgatttgggtctggtagaagcaacaattgaatatatatgtcgaaatgaa
ggtggtggagcaattcttgtatttcttactggctgggatgaaatctctaagctatttgag
gaacttgaaaaaaattacttacttggaaaccgtagcaagttcttaatccttccaatacat
ggttcaatgcctaccatcgaccaatgtgaaatatttgaccgtcctccccctaacaaaaga
aaaattgtgctagcaacaaatattgctgagagtagcatcaccatagatgatgttgtgtat
gtcatagactgtggcaaagcaaaggaaaccagctatgatgctcttaataagcttgccagc
ttgttaccatcatggatttcaaaggcttcggcacgtcagagacgtggtcgtgctggtcga
gtacaacctggagtttgttatagattgtatccgaaactgatacacgatgctatgccagag
tatcagttacctgaaatcctccgaacacctttgcaagagttgtgcctgcacattaaaagc
ttgcagctgggaactgcggcaccatttttaggaaaagcacttcagccgccagattctctt
gctgttcaaaatgctatagaacttctgaagacaattggggcattagacaataaggaggag
cttactccactgggtcggcatctttgcactgtacctttggacccaaatatagggaagatg
cttctcatgggttctatctttcagtgtctcagtcctgccttaactattgctgcttctctt
gcttaccgcaacccatttgtcctacctataaacagaaaaaaagaagctgatgaagcaaaa
agatattttgcttgtgactctcgcagtgatcatttagctcttgttgaagcttttgaagaa
tggaaggacgcaaaaagtaggggggatgaaaagaatttttgttgggaaaatttcctatcc
ccagcgaccttgcggttgattgatgatatgagaacacaatttctcaatttgttatctgat
attgggtttgttgacaagtcaaagggtgtccaagcttacaaccaacaaagtcatgatttg
gagatggtttgtgcaattctttgtgctggtctctaccctaatgttgtgcagtgcaaaaga
aggggacaccggacagcattctacactaaagaagccgggaaggttgacattcatccctct
tctgttaatgccggagttcattccttccctctgccctacttagtatatagtgaaaaagtg
aaaacaaccagcatctatattagagactctaccaacatttcagattatgccctacttcta
tttggtggtaatcttgaccctagcaaaaatggcgagggcattgagatgcttgggggttac
cttcatttctctgcttctaagagtgtcattgagttgataaagaaattacgtggggagctt
gacaagcttctaaacagaaaaattgaagaaccaggttttgacatttctgatgaaggaaaa
gcagtggttgctgctgctattgaattgctacataatcaagtcatgcaataa
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