Medicago truncatula (barrel medic): 11424505
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Entry
11424505 CDS
T01716
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03013
Nucleocytoplasmic transport
mtr03015
mRNA surveillance pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
11424505
09122 Translation
03013 Nucleocytoplasmic transport
11424505
03015 mRNA surveillance pathway
11424505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11424505
03041 Spliceosome [BR:
mtr03041
]
11424505
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
11424505
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
11424505
Spliceosome [BR:
mtr03041
]
Complex C
Other components
EJC/TREX
11424505
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
11424505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
11424505
NCBI-ProteinID:
XP_003588757
UniProt:
G7I6Z7
LinkDB
All DBs
Position
1:complement(2496475..2504971)
Genome browser
AA seq
427 aa
AA seq
DB search
MGETKEETYEEELLDYEEEDEKAPDSVGAKVNGESGKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIDPVPGQVSALIL
CHTRELAYQICHEFERFSTYLADLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILAL
ARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSSDVDVLNNVQSRFEVDIKQLPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaaacaaaggaagaaacatacgaggaagagcttcttgattacgaagaggaggat
gagaaagcacctgattcagtcggagctaaagttaacggtgaatctgggaagaagggctat
gttgggatccacagttcaggattcagagactttcttctaaagccagagcttcttcgtgct
attgtggactcgggatttgagcatccttctgaagtgcaacatgagtgcataccacaagca
atccttggaatggatgtattatgccaggcaaaatcgggaatgggaaaaactgctgttttt
gttctatcaactttgcagcagattgatcctgttccaggccaagtttctgctcttattctg
tgtcatacaagggaattagcataccagatatgccatgagtttgaaaggttcagcacctac
ttggctgatctcaaggttgctgtcttttatggtggtgtcaacattaaagttcacaaggat
ctgttgaaaaatgaatgccctcatattgtcgttggtacacctggaagaatactagcattg
gccagggataaggacctttcattaaagaatgttaggcatttcattctggatgaatgtgat
aagatgctggaatcactggacatgaggaaagatgtgcaagatattttcaagatgacaccc
catgataagcaagttatgatgttttctgcaacactcagcaaggaaattcgcccagtctgc
aaaaaatttatgcaagatccaatggaaatttatgttgacgatgaagcgaaattgaccctt
catggtctcgttcagcactacatcaaattgaaggaggaggagaagaaccgaaagttgaac
gatcttcttgatgcactggacttcaaccaagttgtgatctttgtgaaaagtgtcagcaga
gcagctgagctggacaagttgcttgtggaatgcaactttccatccatatgcattcattct
ggaatgtcccaggaagaaaggttgaagcggtataaaggttttaaggaggggcatacaagg
attcttgtagcaacagatttagttggcaggggaattgacattgaacgtgttaatatagtg
ataaactatgacatgcctgactctgcagacacatacttgcacagggttggccgagctgga
aggtttggtaccaagggccttgcaattacatttgtttcatgttcaagtgatgttgatgtt
ctcaacaatgttcagtcccggtttgaggtggatataaaacagctccctgagcagattgat
acatctacctacatgccatcataa
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