Medicago truncatula (barrel medic): 11424621
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Entry
11424621 CDS
T01716
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
11424621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mtr03041
]
11424621
03009 Ribosome biogenesis [BR:
mtr03009
]
11424621
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
11424621
Spliceosome [BR:
mtr03041
]
Complex A
U2 snRNP components
U2 related factors
11424621
Complex B
11424621
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
11424621
Ribosome biogenesis [BR:
mtr03009
]
Eukaryotic type
90S particles
Helicases
11424621
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
DEAD
Helicase_C
AAA_22
AAA_19
SRP54
ResIII
nSTAND3
AAA_SelU
ABC_tran
Flavi_DEAD
FtsK_SpoIIIE
AAA_30
T2SSE
AAA_7
Cas3-like_C_2
nSTAND_NTPase5
AAA_29
Motif
Other DBs
NCBI-GeneID:
11424621
NCBI-ProteinID:
XP_024633880
LinkDB
All DBs
Position
3:24044577..24048096
Genome browser
AA seq
689 aa
AA seq
DB search
MGIARKRKVSLFDVVDDSTAKTVKTNGGLIGNNRWNGKPYSPSYFEILEKRKTLPVWHQK
DDFLQFFKDNQILILVGETGSGKTTQIPQFVLEAVDLETPDKHKKMMIACTQPRRVAAMS
VSRRVAEEMDVSIGEEVGYSIRFEDCSSAKTVLKFLTDGMLLREAMTDPLLERYKVIILD
EAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFKSYFLGAPLMKVRGRLHPVK
IFYTKEPETDYLEAAIWTAVQIHTLEPAGDVLVFLTGEEEIEDACRKISNEVAIRGDTVG
PVKVVPLYSTLPPAMQHRIFEPAPPPVREGGLPGRKILVSTNIAETSLTINGIVYVVDPG
LAKQKVYNPRARVESLLVSPISKASAVQRSGRAGRTQPGKCFRLYTERSFNNDLQPQTYP
EILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGAMDDEGNLTKLGK
IMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFIRPKEAQIAADEAKARFIHV
DGDHLTLLNVYHAYKQNNEDASWCYDNFINYRVLKSADNVRQQLVRIMARFNLKLCSTDF
NSRHYYVNIRKTMLAGYFMQVAHFDQQRGRYLTVKDKQEVYLHPSNCLDHKPEWVIYNEY
VLTSRHFIRTVMDIRGEWLVDIAPHYHDL
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgggtatcgcgaggaagagaaaggtgagtttattcgatgtcgtcgacgactctactgct
aagacggtgaaaaccaacggcggtttaatcggcaacaaccgctggaacggaaaaccttac
tctccaagttacttcgagattttggagaagaggaaaacccttccggtttggcaccagaaa
gatgattttttgcagttttttaaggataatcagattttaatcctcgttggtgaaaccggt
agtggcaaaacaacacagatccctcagtttgttctagaagctgttgatttagagactcca
gataaacacaagaagatgatgattgcatgcactcagccacgtagagtggctgcaatgtct
gtttcccgccgcgtggctgaagagatggatgtgagtattggggaagaggttggttatagc
atcagatttgaagattgtagcagtgcaaagacagttttgaaatttctaacagatggtatg
cttttgagagaagcaatgacggatccacttttggaacgatacaaagtgattattcttgat
gaggcacatgaaaggactttggctacagatgtgctatttggccttcttaaggaagttctt
aaaaacagacccgacttgaagttggttgttatgagtgcaacacttgaagctgaaaagttt
aagagctattttttgggagcccctcttatgaaagttcgaggaaggctacatccagtgaaa
attttttatactaaagaaccagaaacagattacttggaggctgctatctggacagcggtg
cagattcacacgcttgaacctgctggagacgtacttgtttttcttactggagaggaagag
atagaagatgcatgtcgcaaaatatccaatgaagttgcaattcggggggacacggtgggc
cctgtgaaagttgtaccgttgtattctactcttcccccggctatgcaacacaggattttt
gagccagctccacctccagttagagagggaggccttcctggaaggaagattttggtatca
acaaacatagcagaaacttcattgaccatcaatggtatagtctatgttgttgaccctgga
ttggctaagcagaaggtttataaccctcgagctcgtgttgagtctttattggtgtctcca
atatcaaaggctagtgcggttcagagatctgggcgtgctggaagaacacaaccagggaaa
tgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcct
gaaattttgagatctaatctcgccaacacagttcttactttgaagaaattgggtatagac
gatttagtacattttgactttatggaccctcctgcaccagaaaccttaatgcgcgctttg
gaagtgttgaattacttgggtgcaatggatgatgaaggtaacttaacaaagttgggtaag
attatgagtgagtttccgttggaccctcagatgtcaaagatgcttgttgttagccctgag
ttcaactgttcaaatgagattctgtcaatttctgcgatgctgtcagtacccaattgcttt
atccggcctaaggaggcacaaatagctgcggatgaagcgaaagctaggtttatacacgtt
gatggagatcatctcacactcttgaatgtatatcatgcctacaagcaaaacaacgaggat
gcttcttggtgctacgacaactttattaattatagggtgttgaaatcagctgataatgtt
cgacaacagctagtgcgtatcatggctcggtttaatctgaagttatgcagcactgacttc
aatagtcgccactactacgtcaacataagaaagacaatgctagcaggatatttcatgcag
gtggctcattttgatcagcagagaggacgctacttgacagttaaagacaagcaggaagta
tacttgcatccatcaaattgcctggaccacaagcctgaatgggttatctataatgaatat
gttcttacgagtcgtcatttcatacgtactgtgatggatatacgtggtgaatggttagtt
gatatagcaccacattaccatgatctatag
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