Medicago truncatula (barrel medic): 11424636
Help
Entry
11424636 CDS
T01716
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A isoform X1
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
11424636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11424636
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
11424636
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
OB_HELZ2
CSD2
OB_RNB
Toxin_R_bind_C
Motif
Other DBs
NCBI-GeneID:
11424636
NCBI-ProteinID:
XP_003629102
UniProt:
G7L8P4
LinkDB
All DBs
Position
8:complement(33404387..33423069)
Genome browser
AA seq
934 aa
AA seq
DB search
MLHNKSFVKKTKGGKVIRQVREHYLRDDIYCGAPSCTICNTSGARLSASPSTILVLDTNV
VLNQIDLLENPAIDDVVVLSIVLDEVKNKNLSVYNRLRAICSNPMRKFFVFSNEYHRDTY
VKEMSGETKNDRNDRAIRVASQWYQKHLGDAIKVLLVTNDKENKRKASEEGICAETVESY
VKSLDRPDLLDLLVRPSSEDVEMEDVEDHRPSKRKIIYAEHKPMSEITSGLHRGIYHQGK
LRVNRYNPFEAYVGSESIGDEIIIYGRSNMNRAFDGDIVAVELLPQDQWQGEKSMSIASE
EDEDDDDVHLAPNSADVAPRTIPQQSSTGEINAGSGRPSGCIVGIIKRNWQSYCGSLEPM
PIPGGSRGVAYALFVSKDRRFPKIRIQTRQLENLLDKRIIVSVDSWDRQSRYPSGHYVRT
VGKIGDKDTETEVVLIENDINSRPFSAQVLACLPPLPWSVSSEDLSIPFRQDLRHLRVFS
VDPPGCKDIDDALHCIALPNGNFDVGVHIADVTNFVFPGTPLDDEASQRGTSVYLVEKRI
DMLPKPLTEDVCSLRSDVERLAFSVIWEMTPEADIISTRYTKSVIKSAAALSYVEAQARM
DDSRLMDPVTTDLRNMNSLAKKMRLRRIENGALTLASAEVKFQIDTETHNPLDIGIYQIK
EANQMVEEFMLAANVSVAQQILKSFPLCSLLRRHPTPTKEMLEPLLRVSAAIGLNLDVSS
SKALADSLDHAVGDDPYFNKLIRILTTRCMSQAVYFCSGDLSPPEYHHYGLATPLYTHFT
SPIRRYADVIVHRLLAASIGISKLPSVFQDRLQLTSIADNLNYRHRNAQMAGRASVELNT
LIYFRTRPTDTEARVVKIRSNGFFVFVPKFGIEGPVYLTTRAEKGSGEWYVDEQEQKIKK
MDGSFSYSILQTVQIHLEVVEPQPNRPKLQLTLI
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgcttcacaacaagtccttcgttaagaaaaccaaaggtggcaaagtcataaggcaagta
agggaacactacttgcgtgatgatatatattgcggagctccgtcttgcactatctgtaac
acttctggtgctagactcagtgcttctccttccactattcttgttctcgacactaatgtt
gttcttaatcagattgatttgctggagaatcccgctattgatgatgttgttgtactgtct
attgtgttggacgaggtcaagaacaagaatttgtcggtttataatcggttaagagctatt
tgtagtaatccaatgaggaaattctttgttttttccaatgagtaccacagggatacatat
gttaaggaaatgagtggggaaactaaaaatgacaggaatgatagagctattcgagtggct
tcacagtggtatcagaaacatctaggtgatgcaataaaggttttgcttgtaactaatgat
aaagagaacaaacggaaggcgagtgaagagggcatttgtgcagaaacagttgagtcatat
gtcaagtctttggaccgacctgatttacttgacctgcttgtgcggccttcatctgaagac
gtggagatggaagatgttgaagatcatagaccatccaagaggaaaataatttacgcagag
cataaaccaatgtcagaaatcacatctggtttgcatcgtggaatatatcatcaagggaaa
cttcgtgtaaaccgttacaatccattcgaagcatatgtcgggagtgagagcattggcgat
gagataattatttatgggcgatctaacatgaaccgagcttttgatggtgatattgtggca
gttgaacttctgcctcaggaccaatggcaaggggagaagtctatgtctatagctagtgaa
gaagatgaggatgatgatgatgttcatctagccccgaacagcgctgatgttgcaccccga
actattcctcagcaaagttctactggagaaataaatgctggatccggtcgcccttctggt
tgtatcgttggtattataaagagaaactggcaatcgtattgtggatctttggagccaatg
cctatacctggagggagtcgtggtgtggcctatgccttatttgtctccaaagatcgtaga
tttcccaagattcgtatccaaacccgccaacttgagaaccttttggacaaaaggattatt
gtatcagttgattcttgggatcgtcaatctcgatatccatctggccattatgtgcggact
gtaggaaagataggtgataaagatactgaaactgaggtggtcttgatagaaaatgatata
aattcaaggccattctctgcacaagtgctagcatgcctgccaccattgccatggtcagtc
tcttctgaagatttgtccattccatttaggcaagatttgcgtcacttgcgtgtcttcagt
gtggaccctccaggctgcaaggatattgatgatgcactccactgcattgctcttccaaat
ggaaactttgatgttggagttcatattgccgatgttacaaattttgtgtttcctggcact
cctctcgatgatgaggcttctcaaaggggtacatcagtttaccttgttgagaagcgaata
gacatgcttccaaaacctttaacagaggacgtatgttctcttcggtctgatgtggagagg
ctagcattttctgtcatatgggaaatgacacctgaagcagatatcatttccaccagatac
acaaaaagtgtcataaaatctgctgcggcattgtcttatgttgaagcacaagcgaggatg
gatgatagtcgattgatggacccagtaactactgacttgagaaacatgaatagtttagcc
aagaaaatgagattaaggcgtattgagaacggagctttgactcttgcatctgcagaagtc
aaatttcaaattgacacagagactcacaatccccttgatattggtatataccagataaag
gaagccaatcaaatggtggaggagtttatgcttgctgctaatgtttctgttgcgcaacaa
attcttaaaagttttcctttgtgctcattattgaggcgacatccaactccaactaaagag
atgcttgaacccttgctacgtgtttctgctgcgattggtctaaacttggatgtctcatca
tcaaaagcattggctgactctcttgaccatgctgtgggtgatgatccatatttcaacaag
ttgatccgcattctgacaactaggtgcatgagtcaggcagtttatttctgtagtggggat
cttagccctccagaatatcatcattacgggcttgcaacacctttatatacccatttcaca
tcacctataagaagatatgctgatgtcattgtacacaggctacttgctgcttctatagga
atatccaagttaccgtctgtatttcaagacagactgcagctcaccagtattgcagacaat
ttaaattataggcacaggaatgctcagatggcagggcgggcctctgtagagctgaatact
ctcatttatttccgaactaggccaactgataccgaggctagggtagtcaagataagatct
aatggtttttttgtgtttgttcccaaattcggcatagaaggacctgtatatttgacaaca
agagctgaaaagggtagcggagaatggtatgtagatgaacaagagcagaagattaaaaag
atggatggtagcttttcatacagcattttgcagactgtacaaattcacttggaggttgtg
gagcctcaacctaaccggccaaagcttcagcttactctcatctag
DBGET
integrated database retrieval system
