KEGG   Medicago truncatula (barrel medic): 11425826
Entry
11425826          CDS       T01716                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    11425826
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mtr03021]
    11425826
   03036 Chromosome and associated proteins [BR:mtr03036]
    11425826
Transcription machinery [BR:mtr03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     11425826
   Coactivators
    SAGA/TFTC/STAGA complex
     11425826
Chromosome and associated proteins [BR:mtr03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     11425826
    STAGA complex
     11425826
    TFTC complex
     11425826
    SAGA complex
     11425826
    SLIK complex
     11425826
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_IFT122_1st TFIID_NTD2 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd WD40_CDC20-Fz WD40_Gbeta Beta-prop_WDR36-Utp21_2nd EIF3I WDR55 Beta-prop_TEP1_2nd Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_EML ANAPC4_WD40 DSE1_N WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_VPS8 Beta-prop_SCAP Beta-prop_Aladin ASA1 WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_WDR41 Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_WDR19_1st CFAP251_N Beta-prop_NOL10_N Beta-prop_DCAF4 Beta-prop_EIPR1 Beta-prop_SPT8 PAC11 Beta-prop_Vps41 Beta-prop_HPS5 Tricorn_2nd Ge1_WD40 LisH Beta-prop_Nup120_160 Beta-prop_WDR35_TULP_N Dimer_MINDY4_N Beta-prop_NWD2_C LisH_SSDP Beta-prop_DCAF12 PALB2_WD40 WD_LRWD1 Cytochrom_D1 PROPPIN Beta-prop_ACSF4
Other DBs
NCBI-GeneID: 11425826
NCBI-ProteinID: XP_003603301
UniProt: G7J9V2
LinkDB
Position
3:52385895..52395835
AA seq 669 aa
MDEDEILGYVTAYLKKKGFKQTEKVFQEEFQQNKTSSSSNSILEPDIANHLHAFSQLENG
PARYHNGYSRLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARNFFTTFRED
HELMHLRDIQKLEGVLSPTHLKEMEFAHSLRQSKFNIKICEYSYELLLQHLHSTQSTTIL
GIINEHINFQVTSGQPSLISDDPEAVTLTGSSQEAANQTNQKEIHWGLLEDSLEERLEKP
GALLSDSEKGDGEAKEGENDENKKRSIEVGKQGASSKKMKKDRGGTATGKSAKPEVTTVS
AAPRVKAELPLPIIPTEVEHSILEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSSISHD
GSLVAGGFSDSSLKVWDMAKLGQQPSSSLSQGENDTSQNEQMLGKSGGKRQYTLFQGHSG
PVYAASFCPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPMGHYFASSS
HDRTARVWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRV
FVGHRGMILSLSMSPDGRYMASGDEDGTIMMWDLSSGRCVTPLVGHTSCVWSLAFSSEGS
ILASGSADCTVKLWDVNTSTKVSRTEEKNGNANRLRSLKTLPTKSTPVNTLRFSRRNLLF
AAGALAKNA
NT seq 2010 nt   +upstreamnt  +downstreamnt
atggacgaagacgaaattctcggttacgtaaccgcatacttgaagaagaaagggtttaaa
caaaccgaaaaagttttccaagaagaatttcaacaaaacaaaacaagttcatcctccaat
tccattctcgaacctgacattgccaatcaccttcatgcattctctcagttggagaatggt
cctgcaaggtatcataatggatatagtagattaagaacttggacttattcttcattggat
ttatataagcatgagttgcttcgtgtgctttatccggtgtttatccattgttttatggac
cttgtagcgaaagggcatattcaagaagctcgaaattttttcactactttccgcgaagac
catgaattgatgcacttacgtgacattcaaaagttggaaggagttctttctcctactcat
ttgaaggaaatggagtttgctcattcgctaaggcaaagtaaattcaacataaagatatgt
gagtattcctatgagcttcttctgcaacatctacacagtactcaatcaaccactatactt
ggtataatcaacgagcatattaacttccaagttacctctggacaacctagcttgatttct
gatgatccagaggctgttacccttactggcagcagccaggaagcagcaaaccagacaaac
cagaaagaaatacattgggggttgcttgaagactcgctagaagaacggttggaaaagcct
ggggccttactttcagactctgaaaagggcgacggggaagcaaaagagggggagaatgac
gagaataagaaaagatcaattgaagtaggaaagcaaggtgcttcaagcaaaaagatgaaa
aaggataggggtggaactgcaacagggaaaagtgcaaagcctgaagttacaactgtatca
gcagctcctcgagttaaagcagaactccccttgcccataatcccaacagaggtagaacac
tccatccttgaagatttaaggaaccgtgtacaacttagtagtgttgcactgccatcagtt
agcttttatacttttatcaatacgcataatggtttaagctgttcatcaatatcccatgat
ggatcattggttgctggaggattttctgactcatcactaaaggtttgggacatggcaaag
cttggacaacaaccctccagttctctttcacagggtgagaatgatacgtcacaaaacgaa
cagatgctcggaaaaagtggtgggaaaagacagtatacactgtttcaaggtcactcaggg
cctgtttatgcagcctctttttgtcctgttggagattttatactttcatcctcagcagat
tcaacaattcgtttatggagcacaaagcttaatgccaatcttgtttgctacaagggccac
aattatcctgtttgggatgttcagtttagtcccatgggtcattattttgccagctcttca
catgacagaactgctagggtttggtccatggacaggatacaacccttaagaataatggcg
ggacacttgtctgatgttgattgcgtccaatggcatgccaactgcaactacatcgcaact
ggttccagtgacaaaacagttcgactatgggatgtgcagagtggagagtgtgtccgggtt
tttgttggtcacaggggtatgatcttgtctttgtcaatgtctcctgatggtcgctatatg
gcgtctggtgatgaagatggcacaatcatgatgtgggacctctctagtggccgctgtgtc
acgcctttggtcgggcacacgtcatgtgtctggtcacttgctttcagttctgaaggttct
attctagcatctggttctgctgattgcactgtaaaattatgggatgtaaatacgagcacc
aaagtttctaggacagaagagaaaaatgggaatgctaacagactcagatcgttgaagacc
ctaccaacgaaatccactcctgtgaacactttgcggttttctcgaaggaatcttcttttt
gcagctggagctcttgcaaaaaatgcttaa

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