Medicago truncatula (barrel medic): 11425826
Help
Entry
11425826 CDS
T01716
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
11425826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtr03021
]
11425826
03036 Chromosome and associated proteins [BR:
mtr03036
]
11425826
Transcription machinery [BR:
mtr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
11425826
Coactivators
SAGA/TFTC/STAGA complex
11425826
Chromosome and associated proteins [BR:
mtr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
11425826
STAGA complex
11425826
TFTC complex
11425826
SAGA complex
11425826
SLIK complex
11425826
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_EML
ANAPC4_WD40
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_Vps41
Ge1_WD40
LisH
Beta-prop_Nup120_160
Beta-prop_WDR35_TULP_N
WD40_like
Beta-prop_VPS8
Beta-prop_NWD2_C
Beta-prop_DCAF12
PALB2_WD40
WD_LRWD1
Cytochrom_D1
PROPPIN
Motif
Other DBs
NCBI-GeneID:
11425826
NCBI-ProteinID:
XP_003603301
UniProt:
G7J9V2
LinkDB
All DBs
Position
3:52385895..52395835
Genome browser
AA seq
669 aa
AA seq
DB search
MDEDEILGYVTAYLKKKGFKQTEKVFQEEFQQNKTSSSSNSILEPDIANHLHAFSQLENG
PARYHNGYSRLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARNFFTTFRED
HELMHLRDIQKLEGVLSPTHLKEMEFAHSLRQSKFNIKICEYSYELLLQHLHSTQSTTIL
GIINEHINFQVTSGQPSLISDDPEAVTLTGSSQEAANQTNQKEIHWGLLEDSLEERLEKP
GALLSDSEKGDGEAKEGENDENKKRSIEVGKQGASSKKMKKDRGGTATGKSAKPEVTTVS
AAPRVKAELPLPIIPTEVEHSILEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSSISHD
GSLVAGGFSDSSLKVWDMAKLGQQPSSSLSQGENDTSQNEQMLGKSGGKRQYTLFQGHSG
PVYAASFCPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPMGHYFASSS
HDRTARVWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRV
FVGHRGMILSLSMSPDGRYMASGDEDGTIMMWDLSSGRCVTPLVGHTSCVWSLAFSSEGS
ILASGSADCTVKLWDVNTSTKVSRTEEKNGNANRLRSLKTLPTKSTPVNTLRFSRRNLLF
AAGALAKNA
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagacgaaattctcggttacgtaaccgcatacttgaagaagaaagggtttaaa
caaaccgaaaaagttttccaagaagaatttcaacaaaacaaaacaagttcatcctccaat
tccattctcgaacctgacattgccaatcaccttcatgcattctctcagttggagaatggt
cctgcaaggtatcataatggatatagtagattaagaacttggacttattcttcattggat
ttatataagcatgagttgcttcgtgtgctttatccggtgtttatccattgttttatggac
cttgtagcgaaagggcatattcaagaagctcgaaattttttcactactttccgcgaagac
catgaattgatgcacttacgtgacattcaaaagttggaaggagttctttctcctactcat
ttgaaggaaatggagtttgctcattcgctaaggcaaagtaaattcaacataaagatatgt
gagtattcctatgagcttcttctgcaacatctacacagtactcaatcaaccactatactt
ggtataatcaacgagcatattaacttccaagttacctctggacaacctagcttgatttct
gatgatccagaggctgttacccttactggcagcagccaggaagcagcaaaccagacaaac
cagaaagaaatacattgggggttgcttgaagactcgctagaagaacggttggaaaagcct
ggggccttactttcagactctgaaaagggcgacggggaagcaaaagagggggagaatgac
gagaataagaaaagatcaattgaagtaggaaagcaaggtgcttcaagcaaaaagatgaaa
aaggataggggtggaactgcaacagggaaaagtgcaaagcctgaagttacaactgtatca
gcagctcctcgagttaaagcagaactccccttgcccataatcccaacagaggtagaacac
tccatccttgaagatttaaggaaccgtgtacaacttagtagtgttgcactgccatcagtt
agcttttatacttttatcaatacgcataatggtttaagctgttcatcaatatcccatgat
ggatcattggttgctggaggattttctgactcatcactaaaggtttgggacatggcaaag
cttggacaacaaccctccagttctctttcacagggtgagaatgatacgtcacaaaacgaa
cagatgctcggaaaaagtggtgggaaaagacagtatacactgtttcaaggtcactcaggg
cctgtttatgcagcctctttttgtcctgttggagattttatactttcatcctcagcagat
tcaacaattcgtttatggagcacaaagcttaatgccaatcttgtttgctacaagggccac
aattatcctgtttgggatgttcagtttagtcccatgggtcattattttgccagctcttca
catgacagaactgctagggtttggtccatggacaggatacaacccttaagaataatggcg
ggacacttgtctgatgttgattgcgtccaatggcatgccaactgcaactacatcgcaact
ggttccagtgacaaaacagttcgactatgggatgtgcagagtggagagtgtgtccgggtt
tttgttggtcacaggggtatgatcttgtctttgtcaatgtctcctgatggtcgctatatg
gcgtctggtgatgaagatggcacaatcatgatgtgggacctctctagtggccgctgtgtc
acgcctttggtcgggcacacgtcatgtgtctggtcacttgctttcagttctgaaggttct
attctagcatctggttctgctgattgcactgtaaaattatgggatgtaaatacgagcacc
aaagtttctaggacagaagagaaaaatgggaatgctaacagactcagatcgttgaagacc
ctaccaacgaaatccactcctgtgaacactttgcggttttctcgaaggaatcttcttttt
gcagctggagctcttgcaaaaaatgcttaa
DBGET
integrated database retrieval system
