Medicago truncatula (barrel medic): 11425902
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Entry
11425902 CDS
T01716
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
11425902
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mtr03041
]
11425902
Spliceosome [BR:
mtr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
11425902
Complex C
U5 SnRNP specific factors
11425902
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
11425902
NCBI-ProteinID:
XP_003597914
UniProt:
G7II78
LinkDB
All DBs
Position
2:complement(51034817..51047386)
Genome browser
AA seq
2356 aa
AA seq
DB search
MWNNGQIAPPGTTVPSIPPPQASQPSYTVLPPPPPPAVETEADAEARLEEKARKWQQLNS
KRYSDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKFRHDKRVYLGALKFIPHAVYKL
LENMPMPWEQVRDVRVLYHISGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFK
RMRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHKPLVKTKLINGP
SYRKWHLSLPIMATLHRLAGQLLSDLSDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLY
RDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVRLCIYHTPMVMYIKTE
DPDLPAFYYDPLIHPITSANKERREKKIYDEEDDDDWVLPDGVEPFLKDTQLYTDTTAAG
ISLLFAPRPFNMRSGRMRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHH
RPPKAQKKKHLFRSLQATKFFQTTELDWVEAGLQVCRQGYNMLNLLIHRKNLNYLHLDYN
FNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLADGLQYT
FSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFL
RGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGI
KQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERI
RRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRK
FSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRI
KRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIK
PADSEPPPLLVYKWCQGINNLQSVWDTSDGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVL
DHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEI
AGPPQMPNEFITYWDTKVETRHPIRLYSRYIDRVHILFRFTHEEARDLIQRYLTEHPDPN
NENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKD
NPNLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVF
ENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIK
IGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHE
EDQLIPNLYRYIQPWESEFVDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRIN
TLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGG
VEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSP
TINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQE
LDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESKDVFDQKASNKY
WIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWFP
GSKPLLQQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFV
DDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWK
TAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIE
KFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTI
VTEPHHIWPSLSDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPS
QQRQQIAEIEKQSHEANQVTAVTTRTTNVHGEELIVTTTSPYEQGAFASKTDWRVRAISA
TNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQISGYLYGISPPDNPQVK
EIRCIVMPPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLAPQDLTSHAKVL
ENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRINKDTGSNPHGYLPTHYEKVQ
MLLSDRFLGFYMIPDNGPWNYNFMGVRHASGMKYGVKLGTPREYYHEDHRPTHFLEFSNM
EEGETITEGDREDTFS
NT seq
7071 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaacggccagattgcgccacctggaactacagttccgtcgattccaccgcct
caagcttcacaaccgtcatacacggtgcttccaccgcctcctcctccggcggttgagact
gaagccgatgcggaagcaagacttgaagagaaggcgaggaaatggcagcagcttaactcg
aagcggtatagcgataagaggaagtttggatttgttgaaactcagaaagaggatatgcct
cctgaacatgtcaggaaaatcatcagggatcatggcgatatgtcctctaagaaatttcgt
cacgacaagcgtgtgtatcttggagcactgaagtttataccacatgctgtttataagctc
ctggaaaatatgcctatgccttgggagcaggttcgagatgtgagggtcttgtaccatatt
tctggtgcgatcacttttgtcaacgaaataccgtgggttgttgagcccatttatcttgct
cagtggggtacaatgtggataatgatgagaagggagaaaagggatcgtcgtcattttaag
aggatgaggtttcctccatttgatgatgaggagcctccacttgactatgctgataatctc
ttagatgttgatcctctagagccgattcagctggagcttgacgaagaggaagattctgcc
gtgtatacttggttttatgatcataagcctcttgtgaaaacaaagcttataaatggtcct
agttaccgaaaatggcatctttctcttcctataatggcaactttgcatcggcttgctggg
cagcttctgtctgatctaagtgacagaaattatttctacttgtttgacatggagtccttt
tttacagcaaaggctttgaacatgtgcatacctggtgggcctaaatttgagcctctctac
cgtgatatggagaaaggagatgaagactggaacgagtttaatgacatcaacaaactcatt
ataaggtctccacttcggacagaatatagaatcgcctttccccatctttataacaacagg
cctcgtaaagtaaggctttgtatttaccatacacccatggttatgtacataaaaactgaa
gatcccgatctacctgcattttattatgatcccttgatacacccaataaccagtgctaac
aaagagcggcgggagaagaaaatctatgatgaggaggatgatgatgactgggtccttcca
gatggtgttgagccttttcttaaagatacacaactttataccgacaccacagctgctgga
atttccttgctttttgctcctcgtccttttaacatgagatctggccgcatgaggcgtgca
gaagacattcctcttgtgtcggaatggtacaaggagcattgtcctccttcatatccagtt
aaagtccgagttagttatcaaaaattgctcaagtgttttgtgttgaatgagctgcatcac
agacctcccaaggctcaaaaaaagaaacacttattcagatcacttcaagcaacaaagttt
ttccagaccacagaacttgattgggttgaagcaggtcttcaagtctgtcgacaggggtac
aatatgttgaatctgttaattcacaggaaaaatttgaactatcttcaccttgattataat
ttcaatttaaagcctgtcaaaaccttgactacaaaagagcgtaagaaatcacgatttggt
aatgcttttcatctttgccgtgagatccttcgtttgacaaaacttgtggtggatgccaat
gttcagttccgtttgggtaacgttgatgctttccagctggcagatggcctccaatatact
ttctctcatgttggtcaattgaccggtatgtatcgttacaaatataggcttatgcggcaa
attaggatgtgtaaagatttgaagcacttgatttactaccgtttcaacactggtcctgtc
gggaagggaccaggctgtgggttttgggcaccaatgtggagggtttggttattctttctt
cgtggtattgtgccccttcttgaacgatggcttggaaatttacttgcacggcagtttgag
ggacgtcattctaaaggagtggccaagaccgttactaagcagcgtgttgagagtcatttc
gacttagagcttcgggcagctgttatgcatgatgtgcttgatgctatgccagagggtata
aagcagaataaggcaagaactatattgcagcatttgagtgaagcttggcgatgctggaag
gcaaatattccttggaaggttcctggtctgcctgttcccatagagaacatgatccttcga
tatgtgaagtcaaaagcagattggtggacaaatgttgctcattataatcgtgaacgtata
agaagaggtgcaactgttgataagacggtttgtcgcaagaatcttggaagattgacacgt
ctttggctgaaggcagaacaggagcgccaacacaattatttgaaagatggcccatatgtt
actcctgaagaagctgttgctatctacacaactacagtccattggttggaatctaggaag
ttctcccctattccatttccacctctatcatacaagcatgatacaaagttgcttatcctt
gcacttgagaggttgaaggaatcctacagcgttgcagtaagattaaatcaactgcaaaga
gaggagttagggctgattgaacaagcttatgataatccacacgaggcattatcgcgaatc
aagcggcacctcctcacccaacgcgccttcaaagaggttggaatagagtttatggattta
tatagctacttgattccggtttatgagatagagcctcttgagaaaattacagatgcatat
cttgatcaatatctgtggtatgaaggcgacaaacgtcatctctttcccaactggatcaag
cctgcagattctgagccaccgcctcttctggtttacaaatggtgtcaaggtatcaataat
ttgcaaagtgtctgggacaccagcgatggtcagtgcgttgtgatgctgcagaccaagttt
gagaaatttttcgagaagattgatttaacaatgttaaataggcttctccgtttggttcta
gaccacaacattgctgattatgtcacggcaaaaaacaatgttgtgctgtcatataaggac
atgagccacacaaattcatatggtcttatacgtggactgcagtttgcatcttttgttgtt
caatattacggcttagtattggatcttttgcttcttggattgactcgagcaagtgagatt
gctggtccaccgcagatgcctaacgagtttattacttattgggacaccaaagtggagacc
aggcatccaattcggctgtattctcgatacatagaccgagttcacatcttatttcgcttc
acacatgaggaggcccgggatctcattcagcgatatctcaccgagcatcctgatcctaac
aatgagaacatggtggggtacaataataagaagtgttggccaagagatgcaagaatgagg
ctcatgaagcatgatgtgaatcttgggaggagtgtcttttgggatatgaagaatcgtctt
cctagaagcatcacaactctggaatgggaaaacagctttgtttctgtttatagcaaggat
aatccaaacttgctttttagcatgtgtggatttgaagtgaggatacttccaaaaattaga
atgactcaagaagcattcagtaacacaagagatggtgtctggaatctccagaatgaacag
acaaaagaaagaacagctgttgccttcttaagagttgacgatgaacacatgaaggtgttt
gagaatcgtgtgagacagattcttatgtcttcgggttctactacattcacaaaaattgtc
aataagtggaatacagctttaataggactcatgacttatttccgagaggcaactgtacac
actcaagagctgttggatttgcttgttaaatgtgaaaataaaattcagactcgtatcaag
attggactcaactcaaagatgcctagcaggtttccacctgtcattttctacaccccaaag
gaaattggaggacttggaatgttgtctatgggtcacattttgattccacaaagtgatcta
cggtacagtcagcagacagatgttggtgtaacccactttagaagtggtatgagtcacgag
gaggaccagttgattcccaatctttatcgctatatacagccttgggagagtgagtttgtt
gattcacagcgtgtctgggctgaatatgcattgaaaaggcaggaagcacaagcacaaaat
agacgcttgacccttgaggatttggaagactcatgggacagaggaataccacgtatcaac
actttgtttcagaaggatagacacactttggcttatgataaaggatggagggtgcgtaca
gacttcaagcaatatcaagttctaaaacaaaatcccttctggtggacacaccagaggcac
gatgggaagttgtggaacttgaataattaccgaactgatgttattcaagcccttggggga
gttgaaggaattcttgaacacacattattcaaaggaacatattttccaacttgggagggt
ctcttctgggaaaaggcatcaggttttgaggaatctatgaagtataagaagctcaccaat
gcacagagatctggtctcaaccagatacccaaccgtagatttacactgtggtggtcacca
accattaaccgagccaatgtttatgttggtttccaagtgcaacttgatctgactggtatt
ttcatgcatgggaaaattccaactttgaagatatctcttatccagatattcagagctcac
ttgtggcagaagatccatgagagtgttgtcatggatctttgtcaggttttggatcaagag
ttggacgctttggagattgagactgtccagaaggaaacaatccatcctaggaaaagttac
aaaatgaacagttcttgtgccgacatccttctctttgctgcccacagatggccaatgtca
aagcctagtcttgtagctgaatctaaggatgtttttgatcagaaagcaagcaataagtac
tggattgatgttcagctaagatggggtgattatgattctcacgacattgagcgttatacc
cgggccaaatttatggattacacaacagataatatgtctatatacccatctcctactggg
gttatgattggccttgatttggcatataacctgcattctgcatttgggaattggttccct
ggatcaaagccactacttcagcaggccatgaataagattatgaagtcaaatcctgcattg
tatgttttgagggaacgcatcaggaaaggtttgcagttgtactcttctgagcccactgaa
ccatatttgtcttcccaaaactatggagagatattcagcaaccaaatcatatggtttgtt
gatgacactaatgtgtatcgggttacaattcataagacttttgaaggaaatcttacaaca
aaacccatcaatggtgccatttttattttcaatccaaggactggacagttgtttcttaag
gttattcatacgagtgtatgggctggtcaaaagcgtcttggccaactggctaagtggaaa
acagcagaagaagttgcagctctagtaaggtctttgcctgtagaagagcagcccaagcag
attattgttactcgtaaaggaatgttggacccattggaggttcacttgctggatttcccc
aatattgttatcaaaggaagtgagctgcagcttcctttccaagcttgtttgaaaattgag
aaatttggggatctcattttgaaggccacagaaccacaaatggttttattcaacatttat
gatgactggctgaagagcatttcctcatacactgcattctccaggctgattctgattctg
cgtgcacttcatgtgaataatgaaaaggcgaagatgttactgaagcctgacaaaactatc
gtcactgaacctcatcacatctggccttctctaagtgatgaccagtggatgaaggtggag
gttgcattaagagatctcatactttctgattatgcaaagaaaaacaacgtgaatacttct
gctttgactcagtctgagattcgtgatattatactcggggctgagattactccaccttca
caacagcggcaacagattgcagagattgaaaaacagtcacatgaagcaaaccaggtgaca
gctgtaacaacaaggaccacaaatgttcacggtgaagaacttattgtgaccaccactagt
ccctacgagcaaggtgcttttgcttcgaagactgattggcgtgtcagagcaatatcagcc
acaaatttataccttcgagtaaaccacatatatgtgaactccgaggatataaaggaaacg
ggctatacctatatcatgccaaagaacattttgaaaaagtttatatgcatagctgatctt
cgaacacagatttctgggtacttgtatggtataagtcctcctgacaatcctcaggttaag
gaaatccggtgcattgtgatgccaccacaatgggggactcatcaacaagtacatctccca
tcagctctcccagagcatgatttcttgaatgatttggaacctttgggatggatgcatact
caaccaaatgaacttccacagctggcgcctcaggatctcacttcacatgccaaggtccta
gagaacaataaacaatgggatggggagaagtgtattatcttgacttgcagttttactccg
ggttcatgttctttaactgcatataaactgacgccatctggttatgaatggggacgtatt
aacaaggatactggaagcaacccgcatggttaccttcccactcattatgagaaggttcag
atgctcctcagtgatcgcttccttggtttctacatgattcctgataatggtccatggaat
tacaacttcatgggagtgaggcatgcatcggggatgaagtatggagtgaagcttgggacc
cctagggagtattaccacgaagatcatagaccaactcatttcttagagttcagcaatatg
gaggaaggggagacaattaccgagggagatcgagaggatacattctcttaa
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integrated database retrieval system
