Medicago truncatula (barrel medic): 11426983
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Entry
11426983 CDS
T01716
Name
(RefSeq) LOW QUALITY PROTEIN: transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
mtr
Medicago truncatula (barrel medic)
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtr03021
]
11426983
03036 Chromosome and associated proteins [BR:
mtr03036
]
11426983
Transcription machinery [BR:
mtr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
11426983
Chromosome and associated proteins [BR:
mtr03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
11426983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
SPT6_acidic
YqgF
Spt6_S1
HHH_9
Reprolysin
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
11426983
NCBI-ProteinID:
XP_039683929
LinkDB
All DBs
Position
7:40803500..40815657
Genome browser
AA seq
1413 aa
AA seq
DB search
MVVDREELECRGMDHEDEEEDEEGKNEYEKDGFVVDDIEEEEEEEQERDQEERQKKNKKR
TTKEEYVLDDDDYELLEDNNINVHRPKTKKFKRLKKGSDNEEQEFSGSGRTADDEGMCQL
WFVFLVCNFSPKNDYKKLKLYAEKYIKKQTCFLGTHLQDIAEEEEDAYTGDEMADFIVDE
EEVDQNGAPVRNKKPKCVKRPISSSALAEAQEIIGNVDELLEARNQTREKNDNRETRLED
EFEPIVLSEKYMTERDGRIRELDIPERMQISEESTGAHSLDGSSIDEESQWIVKQLKHGA
IPWIRKKDSSSQNKEELPIDQDDIARFLELHHHHVQKLDIPLIAMYRKEKCSSLLKDLEQ
PEAGDDNWDKNIKTPILKWHKILWALQDLDRKWLLLQKRKSALQLYYNNRFEEESHCVYD
EKRLNLNRLLFESVMRSLKEAESEREVDDVDSKFNLHFPPGEAGVDGQYKRPKRKSMYST
FSKAGLWEVASRFGCSSEQLGLCLSLVQLQELEDPKETPEEVASNFTCAMYDTLEEALKC
ARHMVSVEISCESSIKKYVRSYFXLVSTSPTADGNITIDSLHQFSGLKWLREKPLSKFED
AQWLLIQKAEEEKLIQVTIKLPEEYLNKLTEQFSELYIXVSVSRSAQLWNEQRKLILHDA
FFRFLLPSMEKEARGILGNKAKHWVRMEYGKAFWNKVSVRPYQQKENDHSSDDEAATRVM
ACSWGPGNPQTTFVMLDSSGEVQDVLYTGSLTLKSQNPNDQQRKKNDQERVLKFITDHQP
HVIVLGAANLSCTRLAEEIYEVIFKMVEENPGDVGHEMDGLSVVYGDEALPRLYENSRIS
SEQLPSQKLGIVRRAVALGRYLQNPLAMVATLCGPRKEILSWKLSPLESFLNPDDKFGMI
EQVMVDVTNQAGLDINLAISHEWLFAPLQFISGLGPWKAASLQRSLVRAGAIFTRKDFLT
EHKLGNKVFLNAVGFLRVRRSGLAASSSQFIDFLDDTRIHPESYILAQELARAVYEEDDT
ADANDDDDALEMAIEHARDRPSYLKNLDVEEYARDNRRQDKIETFYDIKRELIQSFEDWR
KQYEEPSQDEEFYMISGETEETLAEGKMVQVTVCRVQAQKAICGLESGMTGILMKEDYTD
EWRDLNELSDRLHEGDLLTCKIKSIQKNRYQVLLVCKDSEMRSDRLQNNQDLDPNYHEDQ
SSLLREQDKTRKEKEGAKKHFKQRMIVHPRFQNITADEAMEFLSDKGPGESIFHPSSHGP
SYLTLTLKIHDGVYAHKEIVEGGKEHKDITSLLRIGKTLKIGEDTFEDLDEVMDRYLDPL
VTRLKTMLNYRKFRTGTKREVDELLKSEKGLHPMQIVYSFGVSHEHPGGFILTYIRSTNP
HHEYVGLDTKGFRFRNRMFEDIDQLVAYFQRHC
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atggtagttgatcgtgaagaattggaatgtcgtggcatggatcatgaagatgaagaagaa
gacgaggaagggaaaaatgaatatgaaaaggatggatttgtagttgatgacattgaagaa
gaagaagaagaggagcaggaaagggaccaagaagagcgtcagaagaagaacaaaaaaagg
acaacaaaggaggagtatgtccttgacgatgatgattacgagttgctggaggacaataat
atcaatgttcaccgtccaaagaccaaaaagttcaagcgactcaagaagggttccgataat
gaggaacaagagttttccggaagtgggcgaactgctgatgatgaaggtatgtgccaattg
tggtttgtgttcttggtttgtaatttttctccaaagaacgactataagaaattgaaattg
tatgctgaaaaatacatcaaaaaacaaacatgctttttaggaacccatcttcaagacatt
gctgaagaggaggaggatgcttacactggagatgaaatggccgacttcattgtggatgaa
gaagaagttgatcagaacggagcccctgtgaggaataagaagccgaagtgtgtaaaaagg
cctatctcttcctcagctttagcagaagcccaagaaataattggaaatgtcgatgagttg
ctcgaggctcgcaatcaaactcgagaaaagaatgataatagagagactaggcttgaagat
gaatttgagcctattgttctttctgagaaatacatgacagagagggatggcaggattagg
gagctcgatattccagagagaatgcagatatcggaggagagtactggtgctcattcactg
gatggaagtagtatagatgaagagagtcagtggatagttaaacaacttaaacatggggca
atcccttggattcgcaagaaagattccagttcccaaaataaagaggagctaccaattgac
caggatgatattgccagatttttggaactgcaccaccaccacgtgcaaaaattagatatt
cctttaattgccatgtatcggaaggagaagtgttcaagcttattgaaagacctagagcaa
cctgaagctggtgatgataattgggataaaaatatcaagactcctattctaaaatggcac
aagatactttgggctctacaggacctggacaggaagtggttgcttcttcagaagcggaag
agtgcccttcagttatactacaataatcggtttgaagaagagtctcattgtgtatatgat
gagaaaagactaaacttgaataggctattatttgaatcagttatgagatcattgaaggag
gcagaatcagagagggaggttgacgatgttgactccaagttcaacttacattttccacca
ggtgaagctggtgttgatggacagtacaaaaggccaaaaaggaagtcaatgtatagcact
ttcagtaaggcaggtctgtgggaggttgcaagcagatttgggtgtagttctgagcaactc
ggattatgtctatctctagttcagctgcaagagttggaagatccaaaagaaacaccagaa
gaggtggcttctaacttcacttgtgctatgtacgatactctcgaagaagcacttaaatgt
gctaggcacatggtatctgttgagataagttgtgagtctagcataaagaaatatgtccgg
agctactttnnattggtgtcaacctctccaactgccgatggaaatataaccatagattcg
ttacatcagttttctgggctgaagtggctgcgagagaagcccttgtctaaatttgaggat
gcccaatggctccttatacagaaggcagaagaggaaaaactcattcaagtcactatcaag
cttcctgaagagtatcttaataagttgacagaacaattcagtgagctttatattnnagtg
agtgttagcagatctgctcaactgtggaatgaacagaggaagctgatactgcacgatgca
ttttttcgatttcttttaccatcaatggaaaaagaagcaagaggcatcttaggaaacaaa
gcaaagcattgggtacgtatggaatatgggaaagccttctggaataaggtttctgtcagg
ccttatcaacagaaggaaaatgatcatagttcggatgatgaagctgctactagggttatg
gcctgctcttggggccctggaaatccacaaacaacttttgttatgttagattcatcagga
gaagttcaagatgtgctatacactgggtcacttactttaaaatcgcagaatcccaatgac
caacaaaggaagaagaatgaccaagaacgtgtattgaagtttataaccgatcaccaaccg
catgttattgttttaggagcagctaacttgtcttgcactaggttagcagaagaaatatat
gaggttatttttaagatggtcgaggaaaaccctggagatgttggccatgaaatggatggg
ctcagcgttgtgtatggagatgaagccctgcctcgtctttatgaaaattctcgaatttcc
tctgaacaacttccttcacagaagcttggtatagtgaggcgggctgttgctcttggtcga
tatctccagaacccattggcgatggtcgcaacattatgtgggcccagaaaggaaatatta
tcatggaaactgagccctttggagagttttctcaacccggatgataaatttgggatgatt
gagcaggttatggtagatgtcaccaatcaggctggattagacattaatttagcaataagc
catgaatggttatttgctccgttacaatttatttcggggcttggtccatggaaggctgct
tccttgcagagatcgctggttagagctggcgcaatttttacccggaaggattttttgaca
gaacataaacttggtaacaaggtgtttctcaatgccgttggtttcttgcgtgtccggcga
agtggattggctgctagcagcagccaatttattgatttccttgatgatacacgcattcat
ccagaatcatatattcttgcacaggagttggccagagctgtgtatgaggaggatgacaca
gctgatgcaaatgacgacgacgatgcactagagatggccatagaacatgcgagagatcga
cctagttatttgaaaaacctggatgttgaagaatatgctcgtgacaaccgtcgtcaagac
aaaattgaaactttctatgatataaaaagagaattgattcaaagttttgaggattggcga
aagcaatatgaagaaccaagtcaggatgaggaattctatatgatttcaggtgagactgaa
gagactcttgctgaaggtaaaatggtccaagttacagtttgccgagtgcaagcccagaaa
gcaatatgtgggcttgaatcgggaatgaccggaatccttatgaaagaagactatactgat
gaatggagagatctaaatgagttgtctgataggctacatgaaggtgatctgctcacctgt
aaaatcaagtcaatccaaaagaacaggtatcaagtcctccttgtttgtaaagatagtgaa
atgagaagtgatcggttacagaacaaccaggaccttgatcccaattaccatgaagaccag
agctccttactgagggagcaagacaaaactcggaaagaaaaggagggtgcaaagaagcat
ttcaagcaaaggatgattgttcatccacgttttcagaacataactgcagatgaagcaatg
gagttcttgtcggacaagggtcctggtgaaagtattttccatcctagttctcatggtcct
tcataccttactttgactcttaaaattcatgatggagtatatgcccacaaggaaatagtt
gaaggtgggaaggaacacaaggacattacaagcttacttcgaattggaaaaacactaaaa
attggagaagacacttttgaggatttagacgaggttatggaccgatatttggatcccttg
gtgactcgcttaaagactatgttaaattatcgcaagttccggacaggtacaaaaagagaa
gtcgatgaacttctgaagtcagaaaagggattgcatcccatgcagatagtgtacagtttt
ggggtctcacatgagcatcctggcggatttatattgacttacataagaagtacaaatcca
catcatgagtatgttggtcttgacaccaaaggattcagattccgcaataggatgtttgaa
gatattgaccaacttgtggcatattttcagaggcactgttaa
DBGET
integrated database retrieval system
