Medicago truncatula (barrel medic): 11427502
Help
Entry
11427502 CDS
T01716
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8 isoform X1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
11427502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11427502
03036 Chromosome and associated proteins [BR:
mtr03036
]
11427502
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
11427502
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
11427502
mRNA degradation factors
5'-3' decay
Decapping complex
11427502
Chromosome and associated proteins [BR:
mtr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
11427502
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TFIIA
CMS1
Motif
Other DBs
NCBI-GeneID:
11427502
NCBI-ProteinID:
XP_039684075
LinkDB
All DBs
Position
7:complement(35672991..35693498)
Genome browser
AA seq
523 aa
AA seq
DB search
MNNNNRGRYPPGIGLGRGSGSGSGGGGGGLNSNPNNANAGFQQRPHYQQQQQQQYVQRHM
MQNQNQHQQHYQHHQQNQQQYQQQQQQQQQWLRRNQLGGGTDTNVVEEVEKTVQSETNDP
SSQDWKARLKLPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESI
PIALTGSDILARAKNGTGKTAAFSIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKEL
GKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEA
DKLLSPEFQPSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKG
ITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKM
LQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRF
GHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIYCR
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgaacaataacaatagagggagatatccacctgggattgggttaggacgaggtagtggt
agtggtagtggtggtggtggtggtggtttgaactcaaacccgaacaatgcgaacgccggg
tttcaacagagaccacattatcaacaacaacaacaacaacagtatgtgcagaggcacatg
atgcaaaatcagaatcagcatcaacaacactatcagcatcatcaacagaatcaacaacag
tatcagcagcagcagcagcagcagcaacagtggctgaggaggaaccagttgggtggtggt
actgacaccaatgttgtcgaggaggttgagaagactgtacagtctgaaacaaatgaccct
agttcacaagattggaaggcaagactaaagcttccaccagctgatacacgctatagaaca
gaggacgtgacagcaactaagggaaatgagtttgaggattactttttgaagcgtgagctg
ctaatgggaatatacgagaaggggtttgaaaggccttcccctatccaagaagaaagcatt
ccaattgcccttactggcagtgacattcttgctagggctaaaaatggaacaggcaaaaca
gctgcatttagcattcctgcattggaaaaaattgatcaagataacaatattattcaagtt
gttatactggttccaacacgagaattggctctgcaaacatctcaagtgtgtaaagagctt
ggaaaacatttacaaattcaagttatggtcacaacaggtggtaccagtctgaaagatgac
attatgcgtttatatcaacctgttcatctgctagttggtactcccggaagaatattggat
cttgcaaagaagggtgtctgtgttctgaaagattgttctatgcttgtcatggatgaggct
gataaacttctctccccagagttccagccttcaatagagcagctgattcaatttcttccc
ccaacccgtcaaatcctaatgttttcagctacatttcctgttactgtaaaggacttcaaa
gatagatatcttcgtaagccatatatcattaaccttatggatgagctaaccctgaagggt
attacacaattttatgcatttgtggaggagaggcagaaagtccactgcctaaatactctt
ttttctaagctgcaaataaaccaatccatcatcttctgcaattcggtaaatcgagttgaa
ctccttgctaagaaaatcactgaactagggtattcatgtttctatattcatgcaaagatg
ttgcaagaccaccgtaatagagttttccacgacttccgcaatggtgcatgcaggaatctc
gtttgtactgatcttttcactcgaggaatagatatccaagcagtgaatgttgttattaat
tttgattttcccaagaactcagaaacatatctgcacagggttggtcgatccgggaggttt
gggcacctcggtttagcagtgaacttgataacctatgaggatcgcttcaatctgtatagg
attgaacaagaacttggcactgaaataaaacaaattccaccattcattgaccaggctata
tactgtcggtga
DBGET
integrated database retrieval system
