Medicago truncatula (barrel medic): 11427725
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Entry
11427725 CDS
T01716
Name
(RefSeq) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr00040
Pentose and glucuronate interconversions
mtr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
11427725
Enzymes [BR:
mtr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
11427725
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
11427725
NCBI-ProteinID:
XP_024640538
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Position
5:16826320..16828456
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AA seq
474 aa
AA seq
DB search
MAKLYHLFLLTCLVVTISTLVHANVKEDKAYWDRILPTLNTTYWQKKASIAAKANDKAYT
PDPYAVSGNLSSTVSEMIIGGINGRRNLVGLGNSSCMATNPIDRCWRCDPNWANNRKKLA
DCVQGFGRKTTGGKDGPIYVVTDPSDSDLVNPRPGTLRHAVTRNGPLWIIFARSMKIRLN
QELIMAGNKTIDGRGADVTIANGAGITIQFIENVIIHGIKIYDIMVGSGGLVRDSEDHYG
LRTISDGDGISIFGSSHIWIDHVSMRNCRDGLIDAIMGSTAITISNSHFTDHNEVMLFGA
SDTYDGDQKMQITVVFNRFGKKLIQRMPRCRFGFIHVLNNFYNRWEMYAIGGTMHPTIIS
EGNKFIAPNNGHAKELLVASFTKKSKGVPYKILFWFFIVLITKRTLVPEAEWKTWQWRSI
NDLYLNGAFFRQSGAELINRPFSNKDMIKAKPGSYVGRLTRYSRSLRCRVGKPC
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaattgtaccatctcttccttttgacatgtttggtggtaacaatatctacatta
gtgcatgctaatgtcaaagaggacaaagcatactgggataggatattaccgacgcttaat
actacatattggcagaaaaaagcatcaattgctgcgaaggcaaacgacaaagcttatact
cctgacccatatgcagtctccggaaatctgtcttctactgttagcgaaatgataattggt
ggcattaacggaagaaggaatttggtggggttgggcaatagttcatgcatggccacaaac
cccattgataggtgttggaggtgtgatcctaactgggcaaacaaccgcaagaagcttgca
gattgtgtgcaaggttttggaaggaagactactggtggaaaagacggtcctatctatgtg
gtaactgacccctcagatagtgacttggtgaatccacgtcctggtacccttaggcatgca
gttacaagaaatgggcctttgtggatcatcttcgctcgtagcatgaagattaggctcaac
caggagctcataatggcaggtaacaagaccattgatggacgaggagctgatgttaccatt
gctaatggtgctggtattactatccagttcatcgagaatgtgatcatccatgggatcaaa
atttatgacattatggttggaagtggtggacttgttagagatagtgaggaccattatggt
ctaaggactattagtgatggtgatggaatttcaatttttggctcaagccatatttggatt
gaccatgtttccatgagaaactgcagagatggactcattgatgccattatgggatccact
gctattaccatctccaatagccatttcacagatcacaacgaggtaatgttgtttggtgca
agtgatacttatgacggtgatcagaaaatgcagatcacggttgtattcaatcgctttggt
aagaaattaattcaaaggatgccaaggtgtagatttggttttatccatgtgcttaacaat
ttctacaatcgctgggaaatgtatgccattggtggcaccatgcatcctaccattattagt
gagggtaacaaattcatagcccctaacaatggccatgctaaagagctactggttgcatca
tttacaaagaaatctaaaggagttccctataaaatactattttggtttttcattgtactt
ataacaaagaggacgttagtaccagaggcagagtggaaaacctggcaatggagatcaatc
aacgacttgtacctgaacggagcatttttcagacaaagcggagctgagctgattaacaga
ccattctcaaataaggacatgatcaaagctaagcctggatcttatgttggaaggcttact
cgttattctcgcagccttagatgcagggtggggaagccttgttag
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