Medicago truncatula (barrel medic): 11428648
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Entry
11428648 CDS
T01716
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03440
Homologous recombination
mtr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
11428648
03460 Fanconi anemia pathway
11428648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mtr03032
]
11428648
03400 DNA repair and recombination proteins [BR:
mtr03400
]
11428648
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
11428648
DNA replication proteins [BR:
mtr03032
]
Eukaryotic type
DNA Topoisomerases
11428648
DNA repair and recombination proteins [BR:
mtr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
11428648
FA (Fanconi anemia) pathway
11428648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF
zf-CCHC
Zn_ribbon_GRF_2
Motif
Other DBs
NCBI-GeneID:
11428648
NCBI-ProteinID:
XP_024633621
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All DBs
Position
3:complement(47653666..47668318)
Genome browser
AA seq
931 aa
AA seq
DB search
MGGRAITVLNVAEKPSVAKSVASILSRNQGLRVRDGRSRYNRIFEFNYTIRGQPCQMLFT
SVLGHLMELDFDDRYRKWHSCDPADLFQAPVHKFVPEDKKDIKRTLEEEARRCQWLILWL
DCDREGENIAFEVINVCTAANPNLTIKRARFSALIDREIHQAVQNLVEPNKWFADAVDAR
QEIDLRIGATFTRFQTMLMKDAFVIDTVTDGRNTVLSYGPCQFPTLGFVVERYWEIQAHE
PEEFWLIKCSHRSDEGVANFSWERGHLFDYTCAVIIYEMCIEEPTATVTKVTPKEKPKYP
PHPLSTIELEKRASRYFRMSSERTMKVAEELYQGGFISYPRTETDNFSSRTDLHAIVQEQ
QGHPEWGIYAQRLLDPGAGLWRNPRGGGHDDQAHPPIHPTKFSAGESGWSQDHRKLYELV
VRHFLACVSKPALGAETTVEIDIAGERFSACGRVILERNYLDIYIYDRWDGSMIPNYAIG
EQFIPTTLTLDPGKTNPPPLLSEADLLSRMDKECIGTDATMHDHIKKLLDRFYATKDANM
CFTPTNLGEALVMGYDDMGYKLWKPDLRAVMERDMKSVSEGNKSKAEVLDTSLQQMKTCF
LDARLNKVKLLEAMAIFFERLNRVGSDEQNGTGVVVRRCRLCQESDMVLKKNRDGNFMVG
CRSYPQCRSVVWLPGSISEAVVTTNACNNCTPGPVYLIQFKFQQLKIPPSYNVNHLGCIG
GCDEILTQLTEICGTGSRMPARGRGPTASTSNVHHTNPRSTASTSNAHHTNPRQAVCSHC
QETGHSSNDCPSQTRRSRNPQYPGMNQQNGESSVACSSCGTPCGLQTANTDSNRGRDFYS
CQTQGCRFFVRWVDDLNNGSEGRSFPRSNSTPASNRGRNGGRGSRGRGRNGSNSSNGTFV
SATGDPISDRRCYTCGDPSHFANVCPNRGGL
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgggtggacgcgccataaccgtcctaaacgtggcagagaagccgtcggtggcgaaatcg
gtggcgagcatactctctcgcaaccaaggccttcgagtaagggacggtcgttctcgctac
aacagaatcttcgaattcaactacaccattcgaggtcaaccctgtcaaatgctcttcacc
tccgtcctcggtcacctcatggagcttgacttcgacgatcgttaccggaaatggcactcg
tgtgatcccgccgatctcttccaggctccggttcataaattcgttcccgaggataaaaag
gatatcaagaggacattagaggaagaagctaggcggtgtcagtggcttattttgtggctt
gattgcgatagggaaggtgagaatatcgcgtttgaagttatcaatgtgtgtactgcggca
aatccgaatcttactattaagagagctcgattttctgcattgattgacagggaaatccat
caggctgtgcaaaatcttgtcgagcctaataagtggtttgctgatgccgtagatgctagg
caggaaatagatctccgtataggtgccactttcaccagatttcagaccatgttaatgaaa
gatgcttttgtcatagacactgttacagatggcagaaatactgtcttgagttatgggcct
tgccagttccctacgcttggatttgttgtggaaagatactgggagatacaagcacatgaa
ccggaagagttttggttaatcaaatgttctcatagatcagatgaaggcgttgctaatttc
agctgggagcggggacatttgtttgattatacatgtgctgtcataatatatgagatgtgc
atcgaggaaccaactgcaaccgtgacaaaagtaacaccaaaggagaagccaaagtatcct
ccccatcccctgagtactattgagcttgagaaacgggcctcacgatacttccgtatgagc
tctgagcgcacaatgaaggtggcagaagaactttaccaaggtggtttcatcagttatcct
cgtacagaaactgataacttttcttcaaggaccgatttgcatgcaattgtgcaagaacaa
caagggcatcctgagtggggaatatatgcacaacggttgctggaccctggggcgggactt
tggagaaaccctagaggtggtggacatgatgaccaggctcatccacccatccaccccacc
aaattttctgctggagaatcaggatggagtcaagaccatcgtaaactgtatgagttggtt
gttcgccacttcctggcatgtgtctcaaagccggccttaggagctgaaaccacagtggaa
attgacattgctggtgaacgattttcggcatgtgggagggtgattctagagagaaactac
ttggatatctatatctatgatagatgggatggatcaatgattccgaattatgctatcggt
gaacagttcattccaacaacattgacccttgatcccggaaaaactaatccaccacctctt
cttagtgaagcggatttgctgagccgtatggataaggagtgcattggtacggatgctacg
atgcacgatcacatcaagaagctgcttgatcgattttatgcaactaaggatgcaaacatg
tgtttcacaccaactaatctgggtgaggcacttgttatgggatatgatgacatggggtat
aaactatggaaaccagatcttagagcagttatggaacgagatatgaagtcagtcagtgaa
gggaataaaagcaaagctgaagttttggatactagcttgcagcagatgaaaacttgtttc
ttagatgcaagattaaataaagttaaacttttagaagctatggcaatattttttgaaaga
ttaaatagagttggcagtgatgagcagaatggaactggggtagttgttcgacggtgtaga
ctttgccaagaatcagatatggtgctaaagaaaaatcgagatggcaattttatggttgga
tgccgtagttaccctcagtgtagaagtgttgtctggctccctggatcaatatcagaagcg
gttgtgaccaccaatgcttgcaacaattgcactcctggtcctgtttacctaattcaattc
aagtttcagcagctgaaaataccaccaagctacaatgtcaaccatttgggttgcattggt
ggctgcgatgagattcttacacagttgacagaaatatgtggtaccggctcccgcatgcca
gcaagaggtcgaggacctactgcatcaaccagcaacgtccatcataccaacccaaggtct
actgcatcaaccagcaacgcccatcataccaacccaaggcaagcagtttgttcgcactgt
caagaaacagggcattcttctaatgactgtccttcacagactcgacgctccaggaatccc
caatatcctggaatgaaccaacaaaatggggaatcttctgttgcatgcagctcgtgtgga
accccgtgtggtttgcaaactgcaaatacagatagtaacaggggcagggatttctactca
tgtcaaacacaggggtgcagattctttgtaagatgggtggatgacctcaacaatggcagt
gaaggaagaagttttccacgttcaaatagtactccagcatccaaccgtggtcgaaatggt
ggccgtggatctcgtggtaggggtcgcaatggatctaattcttctaatgggacatttgtg
tcagccactggtgatcctatttctgatagaaggtgctatacatgcggtgatccatctcac
tttgctaatgtttgccccaatcgtggtggactctga
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