KEGG   Medicago truncatula (barrel medic): 11428985
Entry
11428985          CDS       T01716                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    11428985
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mtr03041]
    11428985
Spliceosome [BR:mtr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    11428985
 Complex C
   U5 SnRNP specific factors
    11428985
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WDR55 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EIPR1 NBCH_WD40 Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_RIG_2nd ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_DCAF4 WDR90_beta-prop_4th Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_WDR35_TULP_N eIF2A Beta-prop_HPS5 Beta-prop_RIG_1st Beta-prop_DCAF12 Beta-prop_NWD2_C Beta-prop_WDR75_2nd Beta-prop_Nup120_160 RMC1_N WD40_like PEP5_VPS11_N Nbas_N Cytochrom_D1
Other DBs
NCBI-GeneID: 11428985
NCBI-ProteinID: XP_003624685
UniProt: G7L0J5
LinkDB
Position
7:40273316..40276447
AA seq 345 aa
MQGFPGENEHALSVVGSKPMEWSTVPYNAPRAPGPNGKQRTSSLESPIMLLTGHQSAVYT
MKFNPTGSVVASGSHDKEIFLWNVHGDCKNFMVLKGHKNAVLDLHWTSDGTQIISASPDK
TLRLWDTETGKQIKKMVEHLSYVNSCCPTRRGPPLVVSGSDDGTAKLWDMRQRGSIQTFP
DKYQITAVSFSDASDKIYTGGIDNDVKIWDLRKGEVTMTLQGHQDMITSMQLSPDGSYLL
TNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYI
WDTTSRRILYKLPGHNGSVNECVFHPNEPIVGSCSSDKQIYLGEI
NT seq 1038 nt   +upstreamnt  +downstreamnt
atgcaaggttttcctggtgaaaatgaacatgctctgtcagttgttggttcaaagccaatg
gaatggtctactgtgccatacaatgctcctcgtgctcctgggccaaatggaaagcagcgg
acctcaagtttggaatctccaatcatgttgctgaccgggcaccagagtgctgtatacacc
atgaagttcaatccaacaggatcagttgttgcatctggatcgcatgacaaagaaattttc
ctttggaatgtgcatggggattgcaagaattttatggttctaaaaggtcacaagaatgct
gttttagatcttcactggacttcagatgggacacagattatctctgccagcccggataaa
acactcaggttatgggatacagaaacaggaaaacaaatcaaaaagatggtagagcatctt
tcgtatgtcaacagttgctgtccaacccggagggggccacctcttgttgtcagtggctct
gatgatggaacagcaaaattatgggatatgcgtcaaaggggctccatccaaacatttcct
gataaataccagattactgctgtcagcttctctgatgcctcagataagatctacactggt
ggtattgataatgatgtcaagatatgggatttgcgtaaaggtgaggttaccatgacactt
caaggtcatcaagatatgattacaagtatgcaattgagtcctgatggttcctaccttctt
accaacggcatggattgcaagctttgcatttgggatatgcgcccatatgctccacaaaat
cgatgtgtgaagattttggaagggcatcaacacaactttgagaagaatttgttgaaatgt
ggctggtcacctgatggaagcaaggtcacagctgggagttctgatcgaatggtttacatc
tgggataccacttctcgaagaatattgtataagctacctgggcacaatggatctgttaat
gagtgtgttttccatcccaatgaacctattgttggatcttgtagcagtgacaagcagatt
tatcttggggagatatga

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