KEGG   Medicago truncatula (barrel medic): 11429104
Entry
11429104          CDS       T01716                                 
Name
(RefSeq) lysine-specific demethylase 5B isoform X2
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
mtr  Medicago truncatula (barrel medic)
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:mtr01009]
    11429104
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:mtr03036]
    11429104
Enzymes [BR:mtr01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     11429104
Protein phosphatases and associated proteins [BR:mtr01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     11429104
Chromosome and associated proteins [BR:mtr03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    11429104
SSDB
Motif
Pfam: PLU-1 JmjC PHD JmjN zf-C5HC2 ARID KDM5_C-hel PHDvar_NSD UDG-inhib_P56
Other DBs
NCBI-GeneID: 11429104
NCBI-ProteinID: XP_003611093
UniProt: G7KC35
LinkDB
Position
5:2725078..2747749
AA seq 1832 aa
MGKGNPRSVEKRVLGQNLPISSPTIPSAPVYYPTEDEFKDPLEFIHKIRPEAEPYGICRI
VPPNNWKPPFALDLDSFTFPTKTQAIHKLQVRPAACDSKTFELEYGRFLRDYCGKKVKKR
VVFEGEDLDLCKVFNGVKRFGGYDKVVDGKKWGEVARFVRCNGKISDCAKHVLCQLYREH
LYDYEVFCNKVSKGTSTSGSCKSKSDQGVESSVSKKHHGVVDDMKIKDLKVKDRKVKDES
RDQICEQCKSGLHGEVMLLCDRCDKGWHIYCLSPPLKQIPLGNWYCFNCLSSDRESFGFV
PGKQYSLETFRRIADRSRRRWFGQGPVSRVQIEKKFWEIVEGSVGEVEVMYGNDLDTSIY
GSGFPNETNQKQKPQSIDDKLWQEYSTNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYI
GMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSQARAFEKVMRSSLPDLFDAQPDLL
FQLVTMLNPSVLQENGVPVYSTLQEPGNFVITFPRAYHGGFNLGLNCAEAVNFAPADWLP
HGTFGADLYKRYHKTAVLSHEELLCAVAQYGDVDSRGSSYLKMELLKISDREKSWREKLW
RSGIVKSSRLAPRKCPQYVGTEDDPACIICQQYLYLSAVVCSCRPSSFVCLEHWEHLCEC
KTAKLRLLYRHSLGELYDLAFSIDKYTSEEKAESRNVKRQSSCLSALTKKVNGSSITFTQ
LATEWLLQSSTILQNVFVTDASITALRKAEQFLWAGSEMDSVRDMVKSLTEAQKWAEGIK
DCVTKIELWLSHRDSSLKKVNLEYVEEFLRFNPVPCNEPHYHKLKEYAEEARSLLQEIET
ALSMCSNISELELLYSRARGLPIYVKETKKLKGKISSTKTWMDSVRNCISARDPAELDVD
VLYKLKSEIADLQVQLPEIDALQNLLNQAESCSSQCRCMLEGPMNLKNVGLLLKEWDSFT
VDVPQLRLLRNYHSDAVLWVSHFNDVLGRVHRQEDQHNPVDELKSILEEGLSLKIQVDEL
PIVKIELKKASCRQKALKAHDSKMPLESIQQLLKEAAMLEIEGEKQFISLSCVLGVAMRW
EERAGAILSAEASISDFEDMIRASENIFVILASLDDVNKALLEANSWLRNSKPYLASSNC
VSNSVRKVEDLQLLVSQSKHLKVSLEERRTLELVLNDCKKWECEARSLLDDGRCLFELDT
TVHGISSGLLFKVEDLIARIQSAITSGVSLGFDFNDISKLQASCSTLEWCKRALCFCNHS
PCLEDVLEVVKGLSHSSVSGALLKVLVDGVEWLRRALEGISRPCSSRRFKLTDIEDILTD
YQATKMTFTEVNCQLEEAIGKHRSWQEQVRQFFNLSSRDRTWSSLLQLKERGDTIAFSCS
ELELILSEVEKVENWMKKCMDNIGALFQKENSLLHALQKVKQNLDRSLYIYGKLQNQKEP
NLCNCCFVDSDDQKFLTCSTCMDCYHLRCIGLTSKDAGLRNYKCSYCEILKAKSQYSNGS
SLLRFEKHIELNILVKLLSDAEHFCLWIDEKYLLNQLIEKAFACKSGLREIVNLSSAYVN
EDITIISEKLTIAIKASKVAGVYDQGDKCDLELALAKYLWKIQVNILLSGVQKPSIEQIQ
KHLKEGMSMEISPKDHYMLKLTNMNCLVMHWVEIAKKASNDSGAHSLDKVYELLAEGENL
PVDVNEELRMLRARCMLYCICRTPFDPGRMIACYQCSEWYHFDCMKLSCTQDMYICPACI
PCTTLPTNHDRLTSGKLEEPKTPSPRHTNPRKKQKRDVPSHTCIMFASRNEDGSNFRYPN
GIECLRWRNRKPFRRATRRRVELQSLSPFLYA
NT seq 5499 nt   +upstreamnt  +downstreamnt
atgggaaaaggaaaccctaggtctgtagaaaaacgtgtattaggtcaaaatcttccaatt
tcatctccaactataccttcagcacctgtttattatccaaccgaagatgaattcaaagat
cctttagaatttattcataagattagacctgaagctgaaccctatggtatttgtagaatt
gttccaccgaataattggaaacctccttttgcattggatctagattcttttacttttccg
acgaaaacacaggcgattcataagcttcaggttcgtcctgctgcgtgtgattcgaagacg
tttgagttggagtatggtaggtttttgagggattattgtgggaagaaggttaagaagagg
gtggtttttgaaggggaggatttggatttgtgtaaggtgtttaatggcgttaagaggttt
ggtggttatgataaggttgttgatgggaagaaatggggggaggttgcaaggtttgtgagg
tgtaatgggaagatttccgattgtgctaagcatgttttgtgtcagttgtatagagagcat
ctttatgattatgaggttttttgtaataaggttagtaaaggtacgagcacgagtgggagt
tgtaagagtaagagtgatcaaggggtggagagttcggtgtctaagaagcatcacggggtt
gttgatgatatgaaaattaaggatttgaaagtgaaggatcggaaagtgaaagatgaaagc
cgtgatcagatttgcgagcaatgtaaaagtgggttgcatggggaggtgatgcttttgtgt
gataggtgtgataaagggtggcatatttattgtctttcaccgccgttgaagcaaattccg
ttgggaaactggtattgtttcaattgtctgagttcggatagggagagctttggttttgtg
ccggggaagcaatattcgctggaaacttttagacgcattgcagataggtcgaggaggaga
tggtttggacagggacccgtttcaagggtgcaaatagagaagaaattctgggagattgtg
gaggggtcggtcggtgaggttgaggttatgtatggaaatgatttggatacatctatctat
gggagtggttttccaaatgaaaccaatcagaaacagaaaccacaatctattgatgataag
ttatggcaagaatactcaactaacccatggaatctgaataacttgcccaagttaaaaggc
tcaatgcttcgagctgttcatcacaatattactggtgttatggtaccctggctgtatatt
ggaatgctattctcatccttctgttggcatttcgaggatcactgcttttattcaatgaat
tatctacactggggtgagccaaaatgctggtacagtgttcctggtagtcaagccagggca
tttgagaaggtgatgagaagcagccttcctgaccttttcgatgcacagcctgatctgctt
tttcagcttgttactatgttaaacccatctgtcttgcaagaaaatggagttcctgtctac
agcacacttcaggagcctggaaattttgttattactttccccagagcttaccatggtggt
ttcaatcttggccttaattgtgcagaggcagtcaattttgctccagctgactggctacca
cacggtacatttggagctgatctctataagcggtatcacaaaacagctgtattgtctcac
gaggagcttctttgtgcagtagcccagtatggtgatgttgatagcagagggtcctcttat
ttgaaaatggaattgctgaaaatatcagatagagaaaaatcttggagggagaaactttgg
agaagtggtatcgttaaatcttctcgtttagctcctcggaaatgtccccaatatgtagga
actgaagatgatccagcatgcattatttgccagcaatatctctatctctctgcagttgta
tgcagttgcaggccatcatcttttgtgtgtctggagcactgggaacacctttgtgagtgc
aaaactgctaaacttcgtcttctctaccgtcattctcttggtgaattgtatgacttggca
ttttctattgacaaatatacttctgaagaaaaagctgagagtagaaatgtaaaaaggcag
tcttcatgtctgagtgctttgacaaaaaaggtgaatggtagctccattactttcacccaa
cttgctacagaatggcttctgcaatctagtactattcttcagaatgtttttgtgactgat
gcatctattaccgcactaaggaaagctgaacagtttctttgggctggttccgagatggat
tctgttcgggatatggtaaagagtttgactgaagctcagaaatgggcagaagggataaaa
gattgtgtgacaaaaattgagttgtggttgagtcatcgggactcaagtttaaagaaagtt
aatttagaatacgttgaagagtttctgagatttaaccctgtaccatgcaatgagccccat
tatcataaactgaaggaatatgctgaagaagcaagatcgttacttcaggagattgagact
gctttgtcaatgtgctccaacatatctgagttggaacttctatactctagagctcgtggc
ttacccatctacgtgaaagagactaaaaaattaaaagggaaaatttcatcaaccaagaca
tggatggatagtgtcagaaattgcatctcagctagagatcctgctgaattagacgttgat
gttctctacaagttaaaatcagagattgcagatcttcaagttcaactcccagagatagat
gcccttcagaatctattaaatcaggcagaatcttgtagttcccaatgtcgttgcatgtta
gaaggtcctatgaatctcaagaatgttggtttgcttcttaaggaatgggacagttttaca
gttgatgtaccacagttgaggctactaaggaattaccattcagatgctgtgttatgggtt
tctcactttaatgatgttttagggagagttcacagacaggaagatcagcataatccagtt
gatgaattgaagagcattcttgaagaaggtttatctttgaaaattcaagttgacgagttg
cctatagttaagattgagctgaagaaggctagttgccgacagaaagctttgaaggcacat
gattctaagatgcccctcgaatccattcagcaactgctaaaggaggccgccatgctagaa
attgagggagagaaacaattcatcagtctgtcttgtgtgcttggtgtcgccatgcgttgg
gaggaaagggctggagcgattctttcagctgaggcttctatttctgactttgaggacatg
ataagagcttcagaaaatatatttgtaattcttgcttcacttgatgatgttaacaaagcg
ttattagaagctaattcctggttaaggaattcaaagccatatttagcctcttctaattgt
gtgtcaaactctgtgcggaaagttgaggacttgcagttgttggtttctcaatcaaagcat
cttaaagtatctttggaagaaagaaggacacttgaattagttttgaatgactgcaaaaaa
tgggagtgtgaagcacgttctttacttgatgatgggcggtgcttatttgaattggatacc
actgttcatgggataagcagtggtttattgtttaaagtggaagatttgattgcaagaatc
cagtccgccataacatctggtgtatctcttggttttgacttcaatgacatttcaaaactt
caagcatcttgttctacactggagtggtgcaaaagagccctatgtttctgcaatcattct
ccttgtttagaggatgttttggaagttgtgaaaggcctatctcattcctctgtttctggt
gctctattgaaagtactggttgatggggttgaatggcttaggagagcgttagaggggatt
tctagaccttgcagttctagaagatttaaactgactgatattgaagatattcttactgat
tatcaggctactaaaatgacctttacggaagtaaattgtcaacttgaggaagccattgga
aaacataggtcgtggcaagagcaagtgcggcaattttttaacctaagttctagggatcga
acttggtcatcattattgcagctcaaggagcgtggagacaccattgcctttagttgctca
gaacttgaattaatattatctgaagttgaaaaggtggaaaattggatgaaaaaatgcatg
gataatattggagctttattccaaaaagaaaattcgctgcttcatgcactgcagaaggta
aaacagaatctagatagatcactgtacatatacggaaagttgcaaaatcagaaggaaccg
aacctatgtaactgctgctttgttgactctgatgaccagaaatttcttacttgttctact
tgtatggactgctatcacttgcggtgcattggactaacatcaaaagacgctggcctcaga
aattataagtgctcttactgtgaaattttgaaggcgaaatctcaatattcaaatggaagt
tccctcctgaggtttgagaagcatattgaattgaacattcttgtcaaacttctttctgat
gctgaacatttctgtctgtggattgacgaaaaatatcttctgaaccaacttattgagaag
gcctttgcatgcaaatctggattgagagaaatagtgaacctttcttcagcttatgtcaac
gaagatattaccatcatctctgaaaaattgaccattgctataaaggctagcaaagtggct
ggtgtctatgatcaaggtgataaatgtgaccttgagctggcattagcaaaatacttgtgg
aaaattcaagtcaatatattattaagtggtgtacaaaagcccagtattgaacagattcag
aaacatctgaaagagggtatgtctatggaaatatcacccaaagatcactacatgctgaaa
cttacaaatatgaattgcttggtcatgcactgggtagaaatagccaaaaaggcatcaaat
gattcaggagcacatagcctagataaagtatatgaacttttagcggaaggtgaaaacttg
cctgttgatgtaaatgaggaactcaggatgttaagagctcgatgcatgctttactgcatt
tgtcgaacgccctttgatcccggaaggatgattgcgtgttatcaatgtagtgagtggtat
cactttgattgtatgaaattatcatgcacgcaagatatgtacatttgccctgcgtgtatc
ccgtgtacaacattgcctactaaccatgacagattaactagtgggaaacttgaggagcct
aaaaccccttctcccaggcatacaaaccctagaaagaaacagaagagggatgtgccgagt
cacacttgcatcatgtttgcatctaggaatgaagatggtagtaattttaggtatcccaat
gggatagaatgtctaaggtggagaaatcgaaagccgtttagaagagcaactaggagacgt
gttgaactgcaaagtctttctccatttctatatgcataa

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