Medicago truncatula (barrel medic): 11429308
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Entry
11429308 CDS
T01716
Name
(RefSeq) uncharacterized protein LOC11429308
KO
K10756
replication factor C subunit 3/5
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03030
DNA replication
mtr03410
Base excision repair
mtr03420
Nucleotide excision repair
mtr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
11429308
03410 Base excision repair
11429308
03420 Nucleotide excision repair
11429308
03430 Mismatch repair
11429308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mtr03032
]
11429308
03036 Chromosome and associated proteins [BR:
mtr03036
]
11429308
03400 DNA repair and recombination proteins [BR:
mtr03400
]
11429308
DNA replication proteins [BR:
mtr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
11429308
DNA Replication Termination Factors
ELG1-RFC complex
11429308
Chromosome and associated proteins [BR:
mtr03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
11429308
DNA repair and recombination proteins [BR:
mtr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
11429308
Check point factors
HRAD17(Rad24)-RFC complex
11429308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RCF1-5-like_lid
RFC_C
CDC37_N
DUF7293
Motif
Other DBs
NCBI-GeneID:
11429308
NCBI-ProteinID:
XP_003604069
UniProt:
G7J8L1
LinkDB
All DBs
Position
3:58716581..58723918
Genome browser
AA seq
800 aa
AA seq
DB search
MSSLQHRNFLEAPTRDGTSIIVMKCYWLNGRVRERKKERMKVPSPTRKQSVGDRHMISPT
RHNMSRSARRRKNSGHWWLSSISWMKKEVDSYDMTHHTHLSSDSPYYKGLTDQSLAIPHE
EYQEDDNNNISSSLRPILLSSSPHSSPYYKGLTDYSLVIDASWATPHPHPHHNSSLSCYH
DSSPYYRGLIALPVPTSPSSLFSLNINFNTTPTTQPPTHDFVVFLSPEDQSLMVTEPEAT
LEEAMVLIHPDIQGKPLRVNNPSSSQATLEKMDDGSDDVEGGKPLRVNYESETIPEKTIL
CDDVVLLVEEHKRKPLRERVTSNSETVLSQQENADKTDLGMEEEMELVMIEQEKPLRESR
ASQVGNENVLINTETTGLKEELRDFWLGGQKTASEQTVSMELPCEHKSMNTAVEGNMYEY
LWATKYQPKILADFICNRDKALQLKALVKGGCGCNHFIFEGPPNVGKRSMIRAMLREVFG
ADGVQVTEEYKDFNLKGEMVENLKLRVQKSLHHVEVNLSEAKGYEKNVIVELFKETYGKV
INSSLPCSPENCQAIILYEAEKLSLESVLYIKWLVEKYKGCNKLFFCCSDESRLQPIQSY
CTTVRLSSPSTQQIVKILEYIVQEEGIKLSHESIKSIVLRSKNNLRQAIRSLEATYRNKN
ALNDDDLVLTGWEDDILNIARNIITEQSPRQLYAIRKKLQSLMIHDVPPDFIYKSLVANL
TSLVDDSLCSGVTKLGKDYTKGGAIKFEGVKHYAQNKQGGSDEKNNKLTKKNAMNYLKVE
EFIAKFMSWYKNSCKSNDHV
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcattgcagcataggaatttcttggaagctccaactagagacggcacaagtata
atagtaatgaaatgttattggttgaatggtagagtaagagaaagaaagaaagagagaatg
aaagtacctagcccgactcggaagcaatctgttggagatcgtcacatgatatcgcctact
cgccacaatatgtcacgttccgcacggaggaggaagaacagtggtcattggtggttgtca
tcaatatcatggatgaagaaagaggttgactcatatgatatgactcatcatactcacctc
tcttctgatagtccctactacaagggtcttaccgatcaatctcttgctattcctcatgaa
gaataccaagaggatgacaacaacaatatctcttcatcactgcgacctatcctcctttca
tcatccccccacagtagtccttactacaaaggtcttaccgattattctcttgtcattgat
gcctcttgggccactcctcatccccacccccatcataactcatccctttcttgttatcac
gactcaagtccatactataggggtcttattgctcttcctgttcccacttccccctcctct
ctcttctccctcaacatcaatttcaataccacccccaccacccaaccaccaactcatgat
tttgttgtctttttaagtccagaagatcaatcactcatggtaacagaaccagaagcaact
ttggaggaggcgatggtgttgatccatcccgatatccaagggaagcctttgagggttaac
aatccgtcatcatcacaagcaactttggagaagatggacgacggtagtgacgatgttgaa
ggcgggaagcctttgagggttaattatgaatcagaaactattccagagaaaacaattttg
tgtgacgatgttgtgttgttggttgaagagcataagagaaagcctttgagggagagagta
acatcaaattcggagacagtattgtcacaacaagaaaatgctgacaaaacagatttgggt
atggaggaggagatggaattggtgatgattgaacaagagaagccattgagagagagtcgt
gcgtcacaagttgggaatgagaatgtactaataaatacagagacaacaggtttgaaagag
gaactcagagacttttggttgggtggtcaaaagactgcttctgaacaaacagtgtcaatg
gaattaccttgtgagcataagtcgatgaacacggctgtggaaggaaatatgtatgagtat
ctgtgggcaaccaaataccagcccaagatattggcagacttcatctgcaacagagataaa
gcacttcagctgaaagcattggttaaaggtgggtgtggctgtaatcattttatatttgaa
ggacccccaaatgtaggaaagagatccatgatacgggctatgcttcgggaggtatttggc
gctgacggagtgcaggtcacagaagaatataaagacttcaacttgaagggagaaatggtc
gaaaatctcaaactgcgtgtgcagaaatcactccatcatgttgaggtaaatctctcagaa
gcaaagggatatgaaaagaatgtgattgttgagttattcaaggaaacatatggtaaggtg
atcaatagttcactgccttgtagcccagaaaactgtcaagcaataattttgtatgaggcg
gagaagctatcgttagaatcggtgttgtatataaagtggctggtagaaaagtataaaggg
tgtaataagctgttcttttgttgctctgatgaatcaaggctacaaccaatccaatcatat
tgcaccacggtccgcctctcatcaccatcaacccaacagattgtcaagattttggaatat
attgtacaagaagaaggaataaaattatcacacgagtcaatcaagagtatagttttaagg
tccaaaaacaatctccgtcaagccattcgttcattggaggccacttaccgaaacaagaat
gccctcaacgacgatgatttagttttaactggatgggaggatgatattttgaatattgct
agaaatataatcacagagcagagtcctagacagttgtacgccattcgaaaaaagcttcaa
agtcttatgattcatgatgttcctcctgactttatttacaagtctttggttgcaaacttg
accagtctagttgatgactcgctatgctcaggggttaccaaacttggcaaggactacact
aaaggtggtgcaatcaaatttgaaggcgtgaagcattatgctcaaaacaaacaaggagga
tctgatgaaaagaacaataaactaacaaaaaagaatgcaatgaactacttaaaagttgaa
gaatttatagcaaaattcatgagctggtacaagaattcgtgtaaaagtaatgatcatgtg
taa
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