Medicago truncatula (barrel medic): 11429595
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Entry
11429595 CDS
T01716
Name
(RefSeq) RNA polymerase sigma factor sigC
KO
K03093
RNA polymerase sigma-I factor
Organism
mtr
Medicago truncatula (barrel medic)
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtr03021
]
11429595
Transcription machinery [BR:
mtr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
11429595
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
Motif
Other DBs
NCBI-GeneID:
11429595
NCBI-ProteinID:
XP_003588449
UniProt:
G7I282
LinkDB
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Position
1:complement(342413..346704)
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AA seq
549 aa
AA seq
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MGLCFGFRLNTKLRYSTVPLHHSSPFFSNSHIFLSSSSSAGGRETLFNPVRLSLLSTVYE
EGETLQKDFRKTFAFSSALEAPEKDLLQGGELTKVNKGKRSLSSVHEMIDNSHLPFEESH
FGLLMENLGVLEETFADSEALRLEKNIILQLEKLGALELFNVCLTTSFGTSCISNCTHKV
LEQVEENKRNHKVDDYTGKVIVHSSKRKENRRRKRGSVSIAPSSRSLPLDDNQEDPLRSS
PASFVKRASNTKNKRAVIAQREVEMSKGVKVLAELEKIRTAIEEDTKQVVSLSSWAETSG
VDEKVLQQQLYHGYYCRDELIRSTRSLVLYFARKYRGMGIALEDLLQVGYIGVLQGAERF
DSTKGYRFSTYVQYWIRKSMSRMVAKYARGITVPWSMNKAISQIQKARKVLKNTTMKYPN
DLEIAKMTGLSLDKIMSASHCLRTVSSMYRGIEYMGHMPDLSIESPEETVMKQHIKKDIH
DILQSLDSRERQIIILRFGLNDDHQPKSLEYIGKIFKVSKEWIRKIEKKALTKLRNETNI
SKLNYYLDL
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgggtctctgttttggttttagactaaacacaaaactcagatatagtactgtccctctt
caccactcttctcctttcttctccaattcacatatcttcctctcttcttcatcttctgct
ggaggcagggaaactttattcaaccccgtgaggttgtctttgctttcaacagtttatgag
gaaggagaaactttgcagaaagattttcgaaagacatttgcattttcatcagcattggaa
gcaccggaaaaagatttattgcaaggaggagaactaacaaaggtaaataaaggaaagagg
tcgcttagcagtgtgcatgaaatgatagataactcgcatttaccttttgaggagtcacat
ttcggtttgttaatggagaaccttggtgttttagaagaaacttttgctgattctgaagca
ttgaggttggaaaagaatattatattgcaactagaaaagcttggagctcttgagttgttc
aatgtttgtctaacaacatctttcggaacctcatgcatatcgaactgtactcacaaagtt
cttgaacaagttgaagagaataagagaaaccacaaagtagatgactatacaggtaaagtt
attgtccattccagcaaaagaaaggaaaatagaagaagaaagagaggatccgtttccata
gcaccttcctctcggtccttgcctttagacgataatcaagaagatccattacgttcttca
ccggcttcttttgtaaaaagagcatcaaatactaaaaataaaagagcggtgattgctcaa
agggaggtggaaatgtcaaaaggtgtaaaggttctagcagaattagagaaaattagaaca
gctatagaagaggatacaaagcaagtggtaagcttgagtagctgggcagaaacatctgga
gttgatgagaaggtgctacaacagcaactgtatcatggctattattgtagagatgagttg
atacggagtactcgttccttagttctatactttgctagaaaatacaggggtatgggaata
gctttggaagatttgcttcaggtaggatatattggtgttctccaaggagcagagcgattt
gacagtacaaaaggataccgattctcaacctatgtgcagtactggataaggaaatcaatg
tcaagaatggtggcgaaatatgctcgaggaatcactgttccttggtcgatgaacaaggca
ataagtcagatccagaaagcacggaaggtcttgaaaaatacgaccatgaaatatcccaat
gatcttgaaattgctaagatgacaggtctttcactggacaaaatcatgtcagctagccat
tgtctaagaacagtttcttcaatgtatcgtggcattgaatacatgggtcatatgcccgat
ttgtcgatagagagtcctgaagagactgtcatgaaacaacacattaagaaagatatacat
gatatcctccaaagcttggactcaagggaaaggcaaataataatcctacgattcggcctt
aatgatgatcaccaacccaagtctcttgaatatatagggaagattttcaaagttagcaaa
gagtggataaggaaaatagagaaaaaagctctcacaaaattaaggaatgaaacaaacatc
tcaaagttgaattattatttggatctgtag
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