Medicago truncatula (barrel medic): 11429899
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Entry
11429899 CDS
T01716
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
11429899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mtr03041
]
11429899
03009 Ribosome biogenesis [BR:
mtr03009
]
11429899
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
11429899
Spliceosome [BR:
mtr03041
]
Complex A
U1 snRNP components
U1 related factors
11429899
Complex B
11429899
Ribosome biogenesis [BR:
mtr03009
]
Eukaryotic type
Pre-60S particles
Helicases
11429899
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
Motif
Other DBs
NCBI-GeneID:
11429899
NCBI-ProteinID:
XP_003597619
UniProt:
A2Q465
LinkDB
All DBs
Position
2:49150840..49157032
Genome browser
AA seq
499 aa
AA seq
DB search
MSRYDSRSSDPTSYRDRRSDSGLAAPSPSPSPSIKNEGASASPARKINLDGLPHFEKNFY
SESPSVRAMTEAEVTEYRLRREITVEGKDVPKPVKSFSDAAFPDYVLEEVKKAGFVEPTP
IQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTREL
AVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIIIATPGRLIDMLESNHTNL
RRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYNPYK
VIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL
RMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGS
LEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELISILEEAGQRVSSELAAMGRGAPPP
PSGGFRDRGKSFGSGRPWS
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgttacgatagccgttcctccgaccccacttcctaccgcgaccgtagaagtgac
tcaggtcttgctgcaccttcaccttcaccttcaccttcaatcaaaaatgaaggtgcctca
gcttcacccgcaaggaaaattaatttggatggattacctcattttgagaaaaatttctac
tccgaatctccttctgttcgtgctatgaccgaagctgaagttactgagtaccgtctacgc
cgcgaaattactgttgaaggcaaagatgttcctaaacctgttaaatccttttccgatgct
gcttttccagactatgtgttagaagaagttaaaaaagctggctttgttgaaccgacacca
attcaatctcaaggctggccaatggctttgaagggacgtgatctaataggaattgcagag
acaggatcaggaaagacacttgcttacttgttgcctgccatagtgcatgttaatgcccag
ccaattctagatcctggggatggacctattgtcttagttttggccccgacacgtgaactt
gccgtccaaatacaacaagaagctactaaatttggtgcgtcgtcaaggattaagagcaca
tgcatttacggtggggttcctaaggggcctcaagtgcgcgatcttcagaaaggcgttgaa
attataattgcgactccgggaaggttaattgatatgctcgagtcaaatcatactaatttg
cgaagggtcacatacctggtattggatgaagctgacagaatgttggacatggggtttgat
ccccagatacggaaaattgtctctcagattcggccagaccgacaaactttgtactggagt
gctacttggccaaaggaggtcgaacaattggcaaggcagttcctttataatccatacaaa
gtgattataggttccgaagatttaaaagctaaccatgctataaagcaatatgttgacatt
gttcctgagaagcaaaaatatgataaattggtgaagttgttggaggacatcatggatgga
agccgaatattgatattcatggacactaaaaagggatgtgatcagattactaggcagctc
cgcatggatggttggcctgcactttcaattcatggagacaaaagtcaagcagaaagagat
tgggtgctttcagagtttaaatctggaaagagtcctataatgactgcaacagatgttgca
gctcgtggtttagatgtgaaggatgtgaagtacgtgataaattatgacttcccgggatca
ctagaggattatgttcaccggattggaaggactgggagagctggtgcaaaaggaactgcg
tacacattctttacagcagctaatgccagatttgcaaaggaacttattagcatacttgag
gaagctggacagagagtgagttctgaattggcagcaatggggcgtggtgcacctcctcca
ccttcaggaggcttccgagaccgaggcaagagttttggcagtggtcgcccgtggagctaa
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