Medicago truncatula (barrel medic): 11430831
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Entry
11430831 CDS
T01716
Name
(RefSeq) pre-mRNA-processing factor 39
KO
K13217
pre-mRNA-processing factor 39
Organism
mtr
Medicago truncatula (barrel medic)
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mtr03041
]
11430831
Spliceosome [BR:
mtr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
11430831
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_16
NRDE-2
TPR_12
TPR_MalT
Cir_Bir_Yir
Motif
Other DBs
NCBI-GeneID:
11430831
NCBI-ProteinID:
XP_003625373
UniProt:
G7KXF7
LinkDB
All DBs
Position
7:46233866..46242785
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AA seq
826 aa
AA seq
DB search
MGDSETMVAEASAAETYPSDGYNNTSSNPVPEAGANVPAPAEIAGEAAAAQPNSGYAFAY
SGDGNAYTAGDPNSVLQAQFSATNESKQAAEVPNEDSSLVGKEAMDSAMVSADHSSVNGS
VDTVGLENGNASENVDESADEKQLTDAYAALSAEEDRLWNIVTANSSDFTAWTSLIDETE
KVAENNILKMRRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYERAVQGVTYSVD
MWLHYCIFAISTYGDPDTVRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWARLAMIY
TRILENPNQQLDRYFNSFKELASNRPLSELRTADEAAAVAGVVSEGIDQGVEGEVHPDGA
DNSPKPASAGLTEAEELEKYIAIREEMYKKAKEFDSKIIGFETTIRRPYFHVRPLNIGEL
ENWHNYLDFIEREGDLSKIVKLYERCVIACANYPEYWIRYVLCMEASESMDLANNVLARA
SQVFVKRQPEIHLFCARFKEQAGDIVGARAAYQLVHTEISPGLLEAIIRHANMEHRLGKL
EDAFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFVYLASGNSEKAREILVGGLENASLSKP
LLEALLHFEAIQPQPKRVDIDFLESLVVKFITPNPENPGVASATEREELSNIFLEFLNLF
GDVQSIKRAEDRHAKLFLPNRGLSELKKRHAEDFLASDKTKVSRAYSAQSPAQSVAGAYP
NGPNQWPNYGVQPQTWPATTQAQGQQWPAGYTQQQAAASYGAYAGYGGNYANPQLPASVP
QSTAYGAYPPAYPAQPALPQQNYAQPVAAPTQQPAAVPQAYYGNYY
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgggagatagtgaaacaatggttgcagaagcatctgctgctgagacgtatccatctgat
ggttacaacaacacttcttcgaatcctgttcccgaggctggtgctaatgttcctgctcct
gctgagattgcaggagaagctgctgctgctcagcccaattcaggctatgcatttgcttat
tctggtgatgggaatgcttatactgctggggatcctaattctgtactacaagctcaattt
agtgcaacaaatgagtcaaagcaagctgctgaagtgcctaatgaggattccagtctggtt
ggaaaggaagctatggattctgctatggtctctgctgaccattcatctgtaaatggaagt
gttgatacagttggacttgaaaatggaaatgcatcagagaatgttgatgagtcagctgat
gagaaacaactcacagatgcttacgctgcgttgtctgctgaagaagatcgattgtggaat
attgtaactgctaattcttctgattttactgcttggacttctttgattgacgagacagag
aaggtggcagagaacaatattttgaagatgcgtagagtctatgatgctttcctagcagaa
ttccctttgtgttatgggtattggaagaaatatgctgaccatgaggcgcgccttggctct
gccgataaagttgttgaagtttatgaacgtgctgttcaaggggttacatattcagtggac
atgtggttgcattattgcatattcgctataagcacctatggagatccagacacagttcgt
aggctttttgaacgaggattagcttatgttggaacagattatctttcgtttcctctttgg
gataaatacattgaatatgagtacatgcagcaagactgggcccgtcttgcaatgatttac
accagaatattagagaatccaaatcagcagttggatcgatatttcaacagcttcaaggag
ttggctagtaatcgacctctttcagaattacggacagctgatgaagctgctgcagtggca
ggtgttgtttcagagggtattgaccaaggtgttgaaggagaggttcatcctgatggtgca
gataattctcccaaacctgcaagtgctggattaacagaagcggaagagttggagaagtat
attgccattagagaagagatgtataagaaagctaaagagttcgattctaagatcattggt
tttgaaacaactatcaggaggccctactttcacgtacgtcctcttaatattggggagctt
gaaaattggcataattatctggactttatagaaagagaaggtgacttgagcaagattgtc
aagttgtatgagagatgcgtcattgcctgtgccaattatcccgagtactggatacgctat
gttttgtgtatggaagctagtgaaagtatggatcttgcaaataatgttctcgctcgggcg
agccaagtttttgtcaagagacaacccgagatacatcttttttgtgctcggttcaaggag
caggctggagatatagttggcgctagagctgcgtatcaacttgtacacactgaaatttct
ccaggtcttcttgaagcaataatcaggcatgccaatatggaacatcgactggggaagttg
gaggatgccttctctttgtatgaacaggccattgccattgagaaaggaaaagaacattca
caaacactgccaatgttgtttgctcagtattctcgatttgtttatttggcttctgggaat
tccgaaaaggctagagagattttagttggaggacttgagaatgcttcactgtcaaagcca
ctacttgaggctttattgcattttgaggctattcaaccccagccaaagcgagttgacatc
gactttctagagtcactggttgtaaaattcataacacccaacccagagaaccctggtgta
gcaagtgcaacagagcgcgaggagctttctaacatttttctggagtttttaaatctcttt
ggagatgttcaatcgatcaaaagggctgaggatagacatgccaaactgttcttgccaaac
aggggcttgtcggagttgaaaaaacgtcatgcagaggatttcttagcctcagataaaaca
aaagtgtcaagagcttattctgctcaatcacctgcccaatctgtagcgggtgcatatcca
aatggacctaaccaatggcctaactatggagtacagcctcaaacttggccagcaaccact
caagcacaaggacaacagtggcctgctggctacacccagcagcaggctgccgcttcctat
ggggcttatgctggatatggaggcaactatgctaacccacaattgcctgcatcagttcca
caaagcactgcatatggggcctatcctcctgcatatcctgcacagccagcactgcctcaa
caaaattatgcacagcctgttgcagccccgacacagcaacctgcagccgttcctcaggca
tattatgggaattactactga
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