Medicago truncatula (barrel medic): 11430941
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Entry
11430941 CDS
T01716
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
11430941
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mtr03041
]
11430941
03009 Ribosome biogenesis [BR:
mtr03009
]
11430941
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
11430941
Spliceosome [BR:
mtr03041
]
Complex A
U1 snRNP components
U1 related factors
11430941
Complex B
11430941
Ribosome biogenesis [BR:
mtr03009
]
Eukaryotic type
Pre-60S particles
Helicases
11430941
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
11430941
NCBI-ProteinID:
XP_003618185
UniProt:
G7KHJ1
LinkDB
All DBs
Position
6:complement(832536..838718)
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AA seq
718 aa
AA seq
DB search
MAATATAAVGPRYAPADPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPSSSAAPLKTS
SVPSSSVQVQQSSQGRGRSPDFSDRYDRNGNGGSNEGGSRNHQSSKGDSFSSHNNVANGT
PAAGNGSSIKSQVPLETGPALSPDAYRRRHEITVTGDNVPPPVTSFASSGFPSEILREVQ
NAGFSAPTPIQAQSWPIALQSKDIVAIAKTGSGKTLGYLLPAFIHLKRTNNNAKMGPTVL
VLSPTRELATQIQDEAVKFSKTSRIACTCLYGGAPKGPQLKDIDRGADIVVATPGRLNDI
LEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNGVPARRQTLMFTATWPKEVRRIAA
DLLVNPVQVNIGNVDELVANKSITQHIEVLTYVEKQRRLETILRSQDQGSKIIIFCSTKK
MCDQLARNLTRQFGAAAIHGDKSQADRDHVLNQFRSGRTPVLVATDVAARGLDVKDIRVV
VNFDFPTGVEDYVHRIGRTGRAGATGIAYTFFGDQDAKHASDLIKILEGANQRVPPELRE
LSSRGGGGFSRSKYRTGGRGDSGFGAKSYDSGYGGKGNDGGYGGRVGDSSYGGRGGYGSS
AAFGRGGGRGFDNDSQRNDRDQSPDRGSSWSDRFKTVNRERSRSPVKGAPSQNAPVSFHQ
AMMQRSGGGSDRNKSFSRERSRSRSPQKGWGGSSGDGRNGGSHSYNGELEEGMIPDED
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggctgctacagcaactgccgcagtgggtccacggtatgccccagcagatcctacactt
cccaaaccatggaagggtcttgtggatgggaagactggctatctttacttttggaatcct
gagactaatgtcactcagtatgaaaggccttcaagctcagctgctccactgaaaacttct
tcagtgcctagctcttctgtccaggttcagcaatcatctcaagggcgtggccggagtcct
gatttcagtgatcggtatgataggaatggaaatggtgggtcaaatgaaggtggatcccgg
aaccatcagagttccaaaggtgatagttttagctctcataataatgttgcaaatggaaca
cctgctgctggaaatggtagttctatcaaaagtcaagtaccattggagaccggacctgca
ttatctccagatgcttatagacggcgtcatgagatcactgttactggagataatgtgcct
ccccctgttacatcatttgcgtcttctggttttccatcggagattcttagagaggtacaa
aatgctgggttctcagccccaacgccaattcaggcacaatcgtggcccattgcacttcaa
agtaaagatatagttgccattgctaaaacaggttcagggaaaaccttggggtatttactt
ccagcctttattcacctcaagcgtactaataataatgccaaaatgggccccactgtgttg
gtactttcaccaacaagggaattggcaacacaaattcaagatgaagctgtgaagtttagt
aaaacatcaagaattgcctgcacttgtttgtatggaggagcaccaaagggtcctcaattg
aaagatattgaccggggagcagatattgtggtagccactcctggtcgcttgaatgatatt
cttgagatgaggagaatcagtcttcatcaggtctcttatctagtgctagacgaggcagac
aggatgctggacatgggttttgaacctcaaattaggaagattgtgaatggggtgcctgct
cgcaggcaaactctcatgtttactgcaacatggcctaaggaggttaggagaattgcagct
gatctgctggttaatcctgtccaggtgaacattggcaatgtagacgagcttgttgctaac
aagtctattactcagcatattgaagttttgacatatgtggagaaacagcgacgactggaa
actattttgcggtcacaggatcaagggtcaaagataattattttctgttctaccaagaaa
atgtgtgatcaacttgctcgtaatcttactcgccagtttggagctgctgctattcacggg
gataaatcccaggctgatagggatcatgtgttgaatcagtttcgaagcggaaggactcct
gtgcttgtagccacagatgttgcagctcgtggactggacgtcaaagacattagagtggtt
gtcaacttcgacttccctacaggagttgaagattatgttcataggattggtaggactggg
agggctggagctactggtatagcttacactttctttggggaccaggatgctaaacatgct
tctgatctcatcaaaatcttagagggtgcaaaccagcgagttcctccagaacttcgtgag
ttgtcatccaggggtggtggtggctttagcagatccaaatatcgtactggtggtcgtggt
gactctggattcggtgctaagagttatgactctgggtatggtggaaagggtaatgatgga
ggatatggcggaagagttggtgattcaagttatggaggaaggggtggatatgggtcttct
gctgcttttggccgaggtggaggccgtggatttgacaatgactcacagaggaatgatcgt
gatcaaagccctgacagaggatctagctggagtgatcgctttaaaactgtcaatcgtgaa
cgcagtcgtagtcctgtcaagggtgcaccatctcaaaatgccccggtcagctttcaccaa
gcaatgatgcaacgcagtggaggtggtagtgatcgcaacaagagctttagccgggagaga
agccgcagtcggagtcctcagaaaggatggggaggatcttcaggtgatggaagaaacggt
ggctctcattcttacaatggagaattggaggaagggatgattcctgatgaagattga
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