KEGG   Medicago truncatula (barrel medic): 11431087
Entry
11431087          CDS       T01716                                 
Name
(RefSeq) pre-mRNA-processing factor 19
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03040  Spliceosome
mtr04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    11431087
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    11431087
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mtr03041]
    11431087
   04121 Ubiquitin system [BR:mtr04121]
    11431087
   03400 DNA repair and recombination proteins [BR:mtr03400]
    11431087
Enzymes [BR:mtr01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     11431087
Spliceosome [BR:mtr03041]
 Complex B
  Other components
   Prp19 complex
    11431087
 Complex C
   Prp19-CDC5 complex
    11431087
Ubiquitin system [BR:mtr04121]
 Ubiquitin ligases (E3)
  U-box type E3
   11431087
DNA repair and recombination proteins [BR:mtr03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    11431087
SSDB
Motif
Pfam: WD40 Prp19 ANAPC4_WD40 NBCH_WD40 U-box Ge1_WD40 PROPPIN PAS_11 zf-Nse V_ATPase_I_N
Other DBs
NCBI-GeneID: 11431087
NCBI-ProteinID: XP_024630846
LinkDB
Position
1:17275559..17285570
AA seq 521 aa
MNCSISGEVPDEPVVSKSSGLLFEKRLIERHIMDFGKCPVTGEPLTMDDIVPIKTGKIVK
PRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARSILAQAERQFPISTPNSVTANAPVHSNGKRAADDEELAPNAKKLHPGISSSIIS
ELTDCNAALSGKRKKREIPATLASVDALETYTQISSHPLNKTSKQGIIALDILHSKDLIA
TGNIDTNAVIFDRPSGQVLATLTGHSKKVTSVKFVGQGESIITGSADKTVRLWQGSDDGH
YNCKQILKDHSAEVEAVTVHATNNYFVTASLDGSWCFYELSSGTCLTQVSDSSEGYTSAA
FHPDGLILGTGTTDSLVKIWDVKSQANVAKFDGHVGHVTAISFSENGYYLATAAHDGVKL
WDLRKLKNFRDYGPYDSATPTNSVEFDHSGSYLAVGGSDVRILQVANVKSEWNLIKTLPD
LSGTGKSTCVKFGPDSKYLAVASMDRNLRIFGQPGEDISDK
NT seq 1566 nt   +upstreamnt  +downstreamnt
atgaactgctccatttctggtgaggttccagatgagcctgtggtgtcaaaaagctctggg
cttttgttcgagaagagattaatcgagaggcatataatggattttggtaagtgtccagtt
acaggagagccacttactatggatgatattgtgccgatcaaaacaggcaagatagtgaag
cctagaccagtgcaggcagcaagcattcctggcatgcttggaatgttccaaaatgaatgg
gatgggttgatgctatctaattttgcattggagcagcagttgcatacagcaaggcaagag
ttaagtcatgctctataccagcatgatgctgcttgccgcgtgattgcaaggcttaaaaag
gaacgagacgaagctaggtcgatacttgcacaggcagaaaggcagttccctatttctact
ccaaattctgtgacagctaatgctcctgttcatagcaatgggaaaagagctgctgatgac
gaggagttggcacctaatgcgaagaaattacatcctggaatatcttctagtataatttct
gagctaacagactgcaatgctgctctttcagggaagaggaaaaagcgagagattcctgcg
actttggcttctgttgatgctctagagacatatacccagatatctagccatcccttaaac
aaaactagcaaacagggcattatagctcttgatatccttcattctaaggacttaatcgca
actggaaatattgataccaatgctgttatttttgaccgtccatcaggacaagtattagct
acactcaccggtcactctaaaaaggtaacaagcgtgaagtttgtaggtcagggtgaatct
atcataactggttcagcagataagacagttcgtttgtggcaagggtcagacgatggtcac
tataactgcaaacagattttgaaggatcattctgctgaagtggaagctgtcactgtccat
gccaccaataattactttgtgactgcatcacttgatggcagttggtgcttttatgaactg
tcttcaggaacttgtctgactcaggtttctgactcttccgaaggctatacatctgcagct
tttcatcccgatggtcttattcttggaactggcactacagattctcttgttaagatctgg
gatgtaaaaagtcaggcaaatgttgctaagtttgatggacatgtggggcatgtaactgca
atatccttttctgagaatggatactaccttgcgaccgcagctcatgatggtgtaaagctt
tgggatctacgcaagttgaaaaacttccgggattatggcccatatgactcagcaactcca
acaaactctgtggagtttgaccacagtggatcctaccttgcagttggaggctctgatgtt
aggatattacaagttgcaaatgtgaaatctgaatggaacttgatcaaaactcttcctgat
ttatctggaacaggaaaatccacatgtgtaaaattcggtccagattcaaaatacttagca
gttgcatcaatggaccggaatcttcgaatatttggccaacctggcgaagacatttctgac
aaatga

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