Medicago truncatula (barrel medic): 11431087
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Entry
11431087 CDS
T01716
Name
(RefSeq) pre-mRNA-processing factor 19
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03040
Spliceosome
mtr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
11431087
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
11431087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mtr03041
]
11431087
04121 Ubiquitin system [BR:
mtr04121
]
11431087
03400 DNA repair and recombination proteins [BR:
mtr03400
]
11431087
Enzymes [BR:
mtr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
11431087
Spliceosome [BR:
mtr03041
]
Complex B
Other components
Prp19 complex
11431087
Complex C
Prp19-CDC5 complex
11431087
Ubiquitin system [BR:
mtr04121
]
Ubiquitin ligases (E3)
U-box type E3
11431087
DNA repair and recombination proteins [BR:
mtr03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
11431087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Prp19
ANAPC4_WD40
NBCH_WD40
U-box
Ge1_WD40
PROPPIN
PAS_11
zf-Nse
V_ATPase_I_N
Motif
Other DBs
NCBI-GeneID:
11431087
NCBI-ProteinID:
XP_024630846
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All DBs
Position
1:17275559..17285570
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AA seq
521 aa
AA seq
DB search
MNCSISGEVPDEPVVSKSSGLLFEKRLIERHIMDFGKCPVTGEPLTMDDIVPIKTGKIVK
PRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARSILAQAERQFPISTPNSVTANAPVHSNGKRAADDEELAPNAKKLHPGISSSIIS
ELTDCNAALSGKRKKREIPATLASVDALETYTQISSHPLNKTSKQGIIALDILHSKDLIA
TGNIDTNAVIFDRPSGQVLATLTGHSKKVTSVKFVGQGESIITGSADKTVRLWQGSDDGH
YNCKQILKDHSAEVEAVTVHATNNYFVTASLDGSWCFYELSSGTCLTQVSDSSEGYTSAA
FHPDGLILGTGTTDSLVKIWDVKSQANVAKFDGHVGHVTAISFSENGYYLATAAHDGVKL
WDLRKLKNFRDYGPYDSATPTNSVEFDHSGSYLAVGGSDVRILQVANVKSEWNLIKTLPD
LSGTGKSTCVKFGPDSKYLAVASMDRNLRIFGQPGEDISDK
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgaactgctccatttctggtgaggttccagatgagcctgtggtgtcaaaaagctctggg
cttttgttcgagaagagattaatcgagaggcatataatggattttggtaagtgtccagtt
acaggagagccacttactatggatgatattgtgccgatcaaaacaggcaagatagtgaag
cctagaccagtgcaggcagcaagcattcctggcatgcttggaatgttccaaaatgaatgg
gatgggttgatgctatctaattttgcattggagcagcagttgcatacagcaaggcaagag
ttaagtcatgctctataccagcatgatgctgcttgccgcgtgattgcaaggcttaaaaag
gaacgagacgaagctaggtcgatacttgcacaggcagaaaggcagttccctatttctact
ccaaattctgtgacagctaatgctcctgttcatagcaatgggaaaagagctgctgatgac
gaggagttggcacctaatgcgaagaaattacatcctggaatatcttctagtataatttct
gagctaacagactgcaatgctgctctttcagggaagaggaaaaagcgagagattcctgcg
actttggcttctgttgatgctctagagacatatacccagatatctagccatcccttaaac
aaaactagcaaacagggcattatagctcttgatatccttcattctaaggacttaatcgca
actggaaatattgataccaatgctgttatttttgaccgtccatcaggacaagtattagct
acactcaccggtcactctaaaaaggtaacaagcgtgaagtttgtaggtcagggtgaatct
atcataactggttcagcagataagacagttcgtttgtggcaagggtcagacgatggtcac
tataactgcaaacagattttgaaggatcattctgctgaagtggaagctgtcactgtccat
gccaccaataattactttgtgactgcatcacttgatggcagttggtgcttttatgaactg
tcttcaggaacttgtctgactcaggtttctgactcttccgaaggctatacatctgcagct
tttcatcccgatggtcttattcttggaactggcactacagattctcttgttaagatctgg
gatgtaaaaagtcaggcaaatgttgctaagtttgatggacatgtggggcatgtaactgca
atatccttttctgagaatggatactaccttgcgaccgcagctcatgatggtgtaaagctt
tgggatctacgcaagttgaaaaacttccgggattatggcccatatgactcagcaactcca
acaaactctgtggagtttgaccacagtggatcctaccttgcagttggaggctctgatgtt
aggatattacaagttgcaaatgtgaaatctgaatggaacttgatcaaaactcttcctgat
ttatctggaacaggaaaatccacatgtgtaaaattcggtccagattcaaaatacttagca
gttgcatcaatggaccggaatcttcgaatatttggccaacctggcgaagacatttctgac
aaatga
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