Medicago truncatula (barrel medic): 11431965
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Entry
11431965 CDS
T01716
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03013
Nucleocytoplasmic transport
mtr03015
mRNA surveillance pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
11431965
09122 Translation
03013 Nucleocytoplasmic transport
11431965
03015 mRNA surveillance pathway
11431965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11431965
03041 Spliceosome [BR:
mtr03041
]
11431965
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
11431965
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
11431965
Spliceosome [BR:
mtr03041
]
Complex C
Other components
EJC/TREX
11431965
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
11431965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
11431965
NCBI-ProteinID:
XP_003603412
UniProt:
G7JB35
LinkDB
All DBs
Position
3:53009595..53015453
Genome browser
AA seq
427 aa
AA seq
DB search
MGEPKDETYEEELLDYEEEEDKAPDTNGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVL
CHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPQIVVGTPGRILAL
AREKNLSLKNVRHFVLDECDKMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELDRLLIECNFPSICIHSGMSQEERLKRYRGFKEGHSRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSSDVDVLNNVQSRFEIDIKQLPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaccaaaggacgaaacttacgaggaagagcttcttgattacgaggaagaagaa
gacaaagctcccgataccaacggagctaaagtcaacggtgaagctaccaagaagggctat
gttggaattcacagttcaggatttagagactttcttctcaaaccagagcttcttcgggct
atcgttgattcgggttttgaacatccttctgaagtgcaacatgagtgcatacctcaagca
attctaggaatggatgtaatttgtcaagctaaatctggaatgggaaagactgctgtcttt
gttctctcgactttgcagcagattgatcctgttccaggccaagtttctgcacttgttctg
tgtcacacaagagaactagcttaccagatatgccacgagtttgagaggtttagtacctac
ttacccgatctgaaggttgctgtcttttatggtggggtcaatatcaaagttcacaaggat
ctattgaaaaatgagtgccctcaaattgttgttggaacgcctggaagaatactagcattg
gctagggagaagaatctttcattgaagaatgttcgtcattttgttttagatgagtgtgat
aagatgctcgaatcactggacatgaggaaagacgttcaagacattttcaagttgactccc
cacgataagcaagttatgatgttttcagcaacactcagcaaggaaatccgcccagtctgc
aaaaaatttatgcaagatcctatggaaatttatgttgatgatgaagccaagttaaccctt
catggactggtgcagcactacatcaaattgaaagaggaagagaaaaaccgcaagttgaat
gatcttcttgatgccctagacttcaaccaagttgttatctttgtgaaaagtgttagtaga
gccgctgagctggacagactacttatagagtgcaattttccttctatatgcattcactct
ggcatgtcccaagaagaaaggttgaagcgttatagaggtttcaaggaggggcattctagg
attcttgttgctacagatttggttggtagagggattgacattgaacgtgtcaatattgtt
ataaactatgacatgcctgattctgcagacacttacttgcacagggttggccgagctgga
agatttggaaccaaaggccttgcaattacatttgtttcgtgttcttctgatgttgatgtt
ctcaacaatgttcagtcaaggtttgaaatagatataaagcagcttcctgagcagattgat
acctctacctacatgccatcatag
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