Medicago truncatula (barrel medic): 11432180
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Entry
11432180 CDS
T01716
Name
(RefSeq) uncharacterized protein LOC11432180 isoform X1
KO
K19026
spatacsin
Organism
mtr
Medicago truncatula (barrel medic)
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mtr03400
]
11432180
DNA repair and recombination proteins [BR:
mtr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
11432180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
11432180
NCBI-ProteinID:
XP_024627764
LinkDB
All DBs
Position
8:complement(42622819..42649031)
Genome browser
AA seq
3187 aa
AA seq
DB search
MDDPAVLQLHKWDPSQTQIPLSEFRQAFISPTRQILLLHSYQNQALLFPLVKGESNSSGG
ESSNDYDRPNGSGLVNDLPCTSGSEIGIHTNVAENKCSRSNSYPFISDVNSLAWARCGDT
YDQHNDASFREFLFVSGTCGVTVHAFPKLTKAKEIVQSALEGSYRQGRWVEWGPIVTLAQ
NMEVGDEGGVEFLRGSAPTKRYLKSFFTKVETIIADGSLRTKFPENKDFPRSTEVVSFNI
FDGSLSLEYLFNQESVQSKEKQPEPADLVEDASDHSSLSSGTEDIKSDCFSKVFGIEING
FYECPKIFSSASYCLVGFFLTLMHHVSVNNSGAKHRCRSKNLLLVARLDNSGIQWVSVVK
LDERTNIVQEVEWVDFQFCDNLLVCLDSSGLITLYSAISGEFVTHLNVSQACGLHPLFDF
HASEKLPLSDDGTCIRQGSDIKDNMYDQHHDSFRRSFKRLIIASHTYFFAVVDACGVIYV
ISLSEYVTDKSYFSEKLLPYCQQFGLGMLVGWGAGGSDIDCQVAFSNFSGNFQSNDLNIK
SGSVSYPDKAVEGDTLRKIDGYTSKERRNLFGPYSSGFSPVSNATNDHKFTDSDVKSPVM
RKIFLPNFKLCEDDSISFSPIGITILSKMKNVKNQRGSKLVHFNLQVKLDAHDDNLLDSA
YDVYHFNGKEEAVFGEVVGCTFQGCFYIVREDGLSVYIPSVSILSSFLPVEYIGYRQPSI
DRGISVLLKDNVEARQPTKRFSPWKIEILDRVLVYEGIEEADQLCSKNGWDIKISRIRQL
QIALDYLKFDEIERSLEMLVDVNLAEEGILRLLFAAVYLMLNKSGSDSETSAASRLLTLA
TCFATTMLRKYGLLQHKNYTCVPEGLNKTRLLSLPPIEPVKLQTEVDFAQKLSELAHFLE
IIRNLQCRHRTVFQKASQGLVESGEESSIMSIEMLHEEPQLAVLPSDLESSDMLNQHELS
FPLPTSGDDNNENLALVPVDPESKLVSEELGNLSHSEKNVLPLENPREMMARWKLGNLDL
KTVVKDALLSGRLPLAVLQLHLHQSEDFIVDKGPHDTFTEVRDIGRAVAYDLFMKGETEL
AVATLQRLGENIEYCLKQLLFGTVRRSLRAQIAEEMKRYGYLGPYELKILKDISLIESLY
PSSGFWKTYHLRLKDTIGPSDPVSTLENRLRLLHNHSFDSLVIECGEIDGVVLDTWMNIN
ENSSALEVDDDDDGYVGYWAAAAVWFDAWDQRTVDRMILNQSLRSDIYLLWESELDYHVC
RNHWKEVFRLLDLMPAYALSAGSLQLNLDVVQSSSGCDAKSSNYGNFLCSIEELDSVCME
VPDVQIYKFSPDIFSGWIRMLAEEKLAKRFIFLREYWEGTMELVALLARSGYISGKNNVR
LEDDPNETSLLRDGTVQALHKIFVHHCAQYNMPNLLDLYLDHHRLVLDLDSLYALQESAV
DCEWARWLLLSRVKGCEYKASLANARSIMSHDLAPRSDLGVLELDEIIRTVDDIAEGGGE
MAALATLMHASVPIESCLNSGGVNRHSNSSAQCTLENLRPTLQRFPTLWRTLVGACLGQD
TMCLLVPKAKTALLDYLSWRDDIFLSTGRDTSLLQMLPCWFSKPVRRLIQLYVQGPLGCQ
SFSAFPMGESLLHRDIDLFESADLHTEISAVSWEATIQRHIEEELHSPLLEENGFGLEHH
LHRGRALAAFNQILGHRVQNLKSERDGSNSSHGQSNIQSDVQKLLSPLGQNEDTLISSVL
STAILHFEDSMLAASCAFLLELCGLSASKMRIDIAVLKRISSFYKSSETNENLKQLSPNG
SVFHAISHESDVTESLARALADEYLHKDSLVIASEVEAPTPSKQPSRALILVLHHLEKAS
LPPYVDGNTYGSWILSGNGDGNELRSHRKVSSQHWSLVTNFCRLHQLPLSTKYLCVLARD
SDWIEFLSEAQIGGYPYDTVVQVASKEFSDPRLRLHMLTVLRGMQSKKKAGSASFLDTPE
KSNPTPFPDENICVPVELFQILAVCEKQKCPGEALLMKAKELSWSILAMVASCFLDVSPL
SCLTVWLEITAARETSSIKVNDIASQIADNVGAAVNATNALPVGDRVLTFHYNRQSPKRR
RLITPISLDSSASAMSDISNTSINERIFDSQGKTMEDEITAEHCGSVNSANFSDEGPASL
SKMVAVLCEQQLFLPLLRAFEMFLPSCPLLPFIRALQAFSQMRLSEASAHLGSFSARIKE
EPTHIHANLGREGQIGTSWISSTAATSADAVLSTCPSPYEKRCLLQLLAATDFGDGGNAA
AYYRRLYWKINLAEPLLRKDNELHLGNENWDDASLLSALEKNRHWEQARNWAKQLEASGA
PWKSAMHHVTESQAESMVTEWKEFLWDVPEERVALWSHCHTLFIRYSFPSLQAGLFFLKH
AEAVEKDLPARELHELLLLSLQWLSGMISLSNPVCPLQLLREIETKVWLLAVESETQVKS
EGDFNFTFSIGENAIKNDSSIIDRTASIIAKMDNHINTMKNRTVEKYETRENNQISHRNQ
VVDAGLSTSFGGGTKPKRRAKGYVALRRPALESVEKSADTDDSSNTISFKNEVQLQEENL
KVEMSFSRWEERVGAAELERAVLSLLEFGQITAAKQLQYKFSPGQIPSEFKLVDAALKLA
SMSTPPSNVSVSMLDEEVHSLLQTYGLLNDKRHADPLQVLESLVVIFTEGSGRGLCKRII
AVIKAANTLGLSFHEAFDKQPIELLQLLSLKAQESFEEAKFLVQTHPMPAASIAQILAES
FLKGVLAAHRGGYIDSQKEEGPAPLLWRFSDFLKWAELCPSEPEIGHALMRLVITGQEIP
HACEVELLILSHHFYKSSACLDGVDVLVALAATRVEAYVLEGDFPCLARLITGVGNFHAL
NFILGILIENGQLDLLLQKYSAAADTNTGTAETVRGFRMAVLTSLKQFNSNDLDAFALVY
THFDMKHETATLLESRAEQSCEKWFRRYNKDQNEDLLDSMRYFIEAAEVHSSIDAGNKTR
NDCAQASLLSLQIRMPDFQWLYRSETNARRALVEQSRFQEALIVAEAYNLNQPSEWALVL
WNQMLKPEVLEEFVAEFVAVLPLQPSMLTDLARFYRAEVAARGDQSHFSVWLTGGGLPAE
WAKYLGRSFRCLLKRTRDLRLRVQLATVATGFGDVTDACAQEMDKVPDNSAPLVLRKGHG
GAYLPLM
NT seq
9564 nt
NT seq
+upstream
nt +downstream
nt
atggatgatcctgctgtacttcagttgcacaaatgggacccatctcagacccaaattcca
ctttcggaatttcgtcaagcttttatttctcctactagacagattctgcttttgcattca
tatcaaaatcaagctctcttgtttcctctcgtcaaaggggagtcaaattctagtggtggc
gaaagcagcaatgattatgacaggcctaacggatcaggtttggtgaatgatttgccttgc
acttcaggatcagaaattggtattcatacgaatgttgctgaaaataaatgttcaagatcc
aatagttacccatttattagtgatgtgaactcattggcctgggctcgttgcggggacacc
tacgatcaacacaatgatgcttcatttagagaatttttatttgtctcgggaacatgtggg
gtaacagtccatgcttttcccaaactgactaaagccaaagaaatagttcaatctgcatta
gaaggtagctatagacaaggtaggtgggtggaatgggggcctatcgttacattagctcaa
aatatggaagtaggagatgaaggtggagttgaatttttgagaggctctgcgccgactaag
agatacctaaagtcgtttttcacaaaagttgaaactattattgctgacggtagtctcagg
accaagttccccgagaataaggattttcctcgctctacagaagtggtttcttttaacata
tttgatggaagtctatccctggaatatctcttcaatcaagaatcagtccagagtaaggaa
aaacagccggaaccagctgatttagtagaagatgcttccgatcactcaagcttgagctcg
ggtacagaggatattaagtctgattgtttttccaaagtatttggtattgagattaacggg
ttctatgaatgccctaagatattctcaagtgcttcatattgcttggtgggtttttttttg
acattgatgcatcatgtgtctgtcaataatagcggtgcaaagcatagatgccggagtaaa
aatttacttcttgttgccaggttagacaattcaggtattcagtgggtttcagtggtgaaa
cttgatgagagaacaaacatagttcaggaagttgagtgggtggatttccaattttgtgat
aatcttcttgtctgtcttgattcttccggcttgattactctatattctgcaatatccggt
gaattcgtgacacatttaaatgtttcacaggcttgtggacttcatcctctttttgatttc
catgcgtcagaaaaattgcctttgagtgatgatggtacatgcattagacaagggtctgac
attaaggataacatgtacgatcaacaccatgattcttttagaagatcatttaaaaggtta
attattgcttcacatacctacttttttgccgtggttgatgcatgtggtgtgatctacgtg
atatctttaagtgaatatgttactgacaagagctatttttctgagaagttgcttccatat
tgtcagcaatttggactggggatgttggttggttggggagctggtggctctgatatagat
tgtcaagtagcattctctaatttctcgggaaattttcaatcaaatgatttaaacataaaa
agcggaagtgtttcttacccagacaaagcagtggagggtgatacgctccggaaaattgat
ggctacacatctaaagaaaggcgtaatttgtttggtccctattcaagtggtttttctcct
gtatctaatgcaactaatgatcacaaatttaccgattctgatgtgaagtcacctgttatg
agaaagatattccttcccaattttaaactatgtgaagatgattctatttccttttctccc
ataggaattactattctctcgaaaatgaagaatgtaaagaatcagagaggctcaaaactt
gtgcattttaatctgcaagtgaagttagatgcccacgacgacaaccttttagatagtgca
tatgatgtataccactttaatggaaaagaagaagctgtttttggagaagtagttggttgc
acatttcagggatgtttctatattgtgagagaagatggtctatcagtgtatattccttct
gtttcaatcttatcaagttttcttcctgttgagtacattggttatcgccaaccaagtata
gacagagggatttcagttttgcttaaagacaatgtggaagcaagacaaccaaccaaaaga
ttttctccttggaaaattgaaattttggacagagtacttgtgtatgaaggaattgaagag
gcagatcagttgtgttcgaaaaacggatgggacatcaaaatttctcgtattcgtcagtta
caaatagcattggactacttgaaatttgatgaaatagaaagatctttggaaatgcttgtg
gatgtgaatctagcggaagaagggattttgagattgctttttgctgcagtttatcttatg
cttaataaaagcggtagtgatagcgaaacttctgctgcttcaaggcttcttacactggct
acttgctttgcgactacaatgcttcgtaagtatgggttactacaacacaaaaactacaca
tgtgtaccagagggcttgaacaagacgagactgctttctcttcccccaattgaaccagtg
aaactacaaactgaagtggattttgctcaaaagctttccgagctggctcatttcttggag
atcatccgaaacctgcaatgtaggcataggacagtattccaaaaggccagtcaaggattg
gttgaaagcggagaagagtcatctattatgagtatagagatgctgcacgaagaaccccaa
cttgcagttcttccatcagatttagagtcatcggatatgttgaaccaacatgagctttct
tttcctttaccaacatcaggcgatgacaataatgaaaatcttgcgcttgtacctgttgat
cccgagtctaaattggtctcagaggaattaggtaacttatctcattcggaaaagaatgtt
ctgcctctagaaaatccaagagagatgatggcacgctggaagttgggtaatctggacctc
aagactgtggttaaagatgcactgctttctggtcgactccctttggctgttcttcaactg
catcttcatcaatcggaagatttcattgttgacaaagggcctcatgatacttttactgaa
gttcgtgatattggcagagctgttgcttatgacttatttatgaagggtgaaactgaactt
gctgttgcaacacttcaaagacttggtgagaatattgaatattgcctcaaacaacttttg
tttggcactgtaaggagatccttacgagcccagattgccgaggaaatgaaaagatatggt
tatctaggaccatatgagttgaagatattgaaagacatttcactaattgagagtctctat
ccaagcagtggcttctggaaaacatatcatctccggctgaaagatactattggtccatca
gaccctgtttcaacgttagaaaatagattaaggctcttgcataaccattcatttgatagt
cttgtcatcgaatgtggtgagattgatggagttgtcttagatacatggatgaatattaat
gaaaactcctctgctctggaagttgatgatgatgatgatggttatgttggatattgggct
gctgctgctgtctggtttgatgcctgggatcaaagaactgttgatcggatgatactgaat
caatctcttcgttcagacatttatttactgtgggagtcggaacttgactatcatgtatgt
cgtaatcattggaaggaagtctttagattgttagacttaatgcctgcatatgccctatct
gctggaagccttcaactcaatttggatgttgtacagtcatcttcaggatgcgatgcgaag
tcttctaattatggaaatttcttatgctctattgaagaattggattctgtatgcatggaa
gttccagatgttcaaatatacaagttttcacctgatattttctctggatggataaggatg
cttgcggaggaaaagcttgcaaaaagatttatatttttgagggaatattgggaagggaca
atggaattggtagctcttttggctcgttcgggttacatatctggcaaaaataacgtaagg
ttggaggatgatcccaatgagacttcattacttagagatggaactgtacaagctttgcat
aaaatatttgtgcatcactgtgcacaatataacatgccaaatcttttggatctctacctt
gaccatcatcgtttggtccttgatctcgattcactttatgcattacaggaatctgcagtt
gattgtgaatgggcaagatggctgctcttatctagagttaaggggtgtgaatacaaggcc
tcacttgccaatgctcgttcaattatgtcacatgatttagctcctagaagcgacctcggt
gttctggagttggatgaaataattcgaactgttgatgacattgctgaaggagggggagaa
atggcagctctagcaaccctgatgcatgcttctgtccccattgaaagctgcttaaatagt
ggtggtgtaaataggcacagtaattcctctgcccagtgcactttggagaaccttagaccg
actctgcaaaggtttcctacattgtggcgcacgcttgttggagcatgtcttggtcaagat
acaatgtgtttgttggtccccaaagcaaaaactgctttattagactatcttagttggcgc
gatgacattttcttgtctaccggacgtgatacttcacttctacaaatgcttccatgctgg
ttttctaagccagttcgaagattgatacagctttatgtccagggtcctcttggttgtcaa
tcattttcagcgttccctatgggggaatctttgctacacagagatattgacttatttgaa
agtgctgatttgcataccgagataagtgcagtctcctgggaggcaactatccaacgacac
attgaagaagaactacatagtcctttacttgaagaaaatggatttggacttgagcatcat
ttgcatcgtggacgagcgttggcagcttttaaccaaattcttggccatagagttcaaaat
ctgaaatcagaaagggacggcagtaattcatctcatgggcaatctaacattcaatcagat
gttcagaaacttctttcaccactaggacaaaacgaagatactctaatttcatctgttttg
tcaactgcaattttgcatttcgaggattctatgcttgctgcatcctgtgcttttcttctg
gaattatgtggtttatctgccagcaaaatgcgcattgacattgctgtgctaaaacggata
tcttctttctataaatcaagtgaaactaatgaaaatctcaagcaattatcgcctaatgga
tctgtgtttcatgcaatatcccatgaaagtgatgtaacagaatctcttgctcgagctcta
gctgatgagtatttgcacaaggattctcttgtaattgcttcagaagtggaagctccaact
ccaagtaaacagccttcacgagctcttattcttgtcttacaccatttggaaaaggcaagc
cttccaccgtatgttgatggaaatacctatgggtcatggatattaagtggaaatggtgat
ggaaatgagttaagatctcaccgaaaggtttccagccagcactggtcattggtaacaaat
ttttgtaggctgcaccagcttcccttaagtacaaagtacctttgtgtattagctagagac
agtgactggatcgaatttttgtctgaagcccagattggaggatatccatatgatacagta
gtccaagtggcatcaaaggagttcagtgatccacgtctcagacttcatatgttgacagtt
ttgagaggaatgcaatcgaagaaaaaggcaggctctgcatcgttcttggacacaccggag
aaaagcaacccaacaccctttcctgatgaaaacatatgtgttccagttgaactcttccaa
atattagcagtgtgtgaaaagcaaaaatgcccaggagaggctctcttgatgaaagcaaaa
gagttgtcttggtcaatattggcaatggttgcttcatgtttccttgatgtttctccatta
tcatgtctgacagtttggttggaaattactgcagcaagagaaacttcatcaatcaaggtg
aacgatattgcttctcagattgcagacaatgttggagcggctgtaaatgcaactaatgcc
cttcctgtaggtgacagagtgctcacatttcattataataggcaaagtcctaaacgtcga
cggttaataactcctatttcactagactcctctgcttctgcaatgtctgacatttcaaat
acttctataaatgaaagaatatttgattctcaaggtaaaactatggaggatgaaataaca
gcagagcattgtgggtctgttaactctgcaaatttttccgatgaagggcctgcttctctt
tccaagatggttgcggtgctttgtgaacagcaattgtttttgcctttgctaagggcgttt
gagatgttccttccatcatgccccttgctgccattcatccgtgctcttcaggcattttca
caaatgcgcctctcagaagcttctgcacatttgggctcgttttctgctcgaattaaggaa
gaaccgacgcacatacatgcaaatttaggaagagaggggcaaattgggacatcatggatt
agttctactgctgctacatctgctgatgctgtgctttcaacctgcccttctccttatgag
aaaagatgcttgctgcaacttcttgctgccacagactttggtgatggtggaaatgcagcg
gcatactatcgaaggctttattggaaaattaatttagcagagcctctacttcgtaaagac
aatgagttgcatttaggtaatgaaaattgggatgatgcttcactcttgtctgctctagaa
aaaaataggcactgggagcaagcaaggaattgggccaagcagttggaggccagtggtgca
ccctggaaatctgctatgcatcatgttactgaatctcaggctgaatctatggtaactgaa
tggaaggaatttctttgggatgtgccagaagagagggttgctttatggagccactgccac
acactattcatcagatattcctttccttctcttcaagctgggttattttttcttaaacat
gccgaagctgtggagaaagatcttcctgcaagggagcttcatgaacttttattgctttct
ctgcaatggctgagtgggatgattagtctttccaaccccgtctgtccgttgcaacttctt
cgtgaaattgaaaccaaagtatggctcttggcagttgagtctgagactcaggtgaagagt
gaaggagacttcaattttaccttttctatcggggagaatgctatcaagaacgactccagt
attattgaccgaactgcaagtataatagctaagatggataatcatataaatacaatgaag
aatagaactgtagaaaaatatgagaccagggaaaacaaccaaatctctcacaggaaccaa
gtggtggatgctggtctttcaacttcttttggtgggggtacaaagccaaaacgaagggcc
aaaggatatgtggcgttaagacgcccagctcttgaatccgttgaaaaaagtgcagatacc
gacgatagctccaatactatcagtttcaaaaatgaggtgcagttacaggaagaaaacttg
aaagtggaaatgtctttttctaggtgggaggagagggttggagcggcagagctggaaagg
gccgttctttctttattggaatttgggcaaatcactgctgccaagcaactgcaatacaaa
ttctcccctgggcaaataccatctgagtttaaacttgtggatgcagccttgaagcttgcc
tctatgtcaactcctcctagcaatgtatcagtgtcaatgcttgatgaggaggtacattca
cttctgcagacatatggtttactgaatgataagcgccatgctgacccactccaggttttg
gagagtttggtggttatttttaccgaaggcagtgggcgtgggctatgtaagagaataata
gcggtcataaaagctgcaaacaccttgggcctctcgtttcatgaggccttcgacaagcaa
ccaattgagctactacagctgctttctcttaaagcacaagagtcctttgaggaggcaaaa
tttctggtgcagactcatccaatgccagctgctagtattgctcaaatacttgcagaatct
ttcctgaagggtgtgttggctgcgcatcggggaggatatattgattcacaaaaagaggaa
ggccctgctcccttgctctggagattttcagacttcttgaagtgggcagagctttgtccc
tctgaaccagagatcgggcatgctttaatgcgtttggtgataactggacaagaaatacca
catgcctgtgaggttgagcttcttattctgtcccatcacttctacaaatcatctgcttgc
cttgatggagttgatgttcttgtggcccttgctgcaactagggttgaggcttatgtgttg
gagggtgatttcccatgcttggctcgcctgataactggagttggaaattttcacgctctc
aatttcattcttggcattcttatagaaaatggtcaattggatcttcttcttcagaagtat
tctgctgctgcagacacgaacacaggcactgctgagacagtcagaggattccgaatggct
gtccttacatctttgaagcaattcaactctaatgaccttgatgcatttgccctggtctat
actcattttgatatgaaacatgagacagccactcttttggaatctagagcagagcaatcg
tgtgaaaagtggtttcggcgttataataaggaccagaatgaagacttgttggattccatg
cgctacttcattgaagctgctgaagttcactcttccattgatgctggcaataaaacacgt
aacgattgtgctcaagcttcccttctgtctcttcaaataagaatgccagatttccagtgg
ctttatcgatcagaaaccaatgctagacgggcattagttgagcagtctcgtttccaagaa
gctttaattgtagctgaagcttataacttgaaccagccaagtgaatgggctttggtgcta
tggaaccaaatgctcaaacctgaagtcttggaggagtttgtagctgaatttgtggcagtt
ctacctcttcagccttcaatgttgactgatttagctagattttatagagctgaagtggct
gccagaggggaccaatctcatttctctgtatggctcacagggggagggttgcctgctgaa
tgggctaaatatttaggaagatcctttaggtgtttactgaagcggacaagggatttgagg
ttgcgggtgcagttggctacagtggcaactggatttggggatgtcaccgatgcatgcgcg
caagaaatggataaggtccctgacaattcagcacccttagtgctgaggaaaggtcacggt
ggagcttacctccctctgatgtga
DBGET
integrated database retrieval system
