Medicago truncatula (barrel medic): 11432456
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Entry
11432456 CDS
T01716
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 13-like
KO
K11838
ubiquitin carboxyl-terminal hydrolase 7 [EC:
3.4.19.12
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
11432456
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
mtr01002
]
11432456
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mtr04121
]
11432456
Enzymes [BR:
mtr01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
11432456
Peptidases and inhibitors [BR:
mtr01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
11432456
Ubiquitin system [BR:
mtr04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
11432456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP7_ICP0_bdg
MATH_2
MATH
ATG16
ubiquitin
DUF2252
Motif
Other DBs
NCBI-GeneID:
11432456
NCBI-ProteinID:
XP_039690699
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All DBs
Position
5:40915610..40922113
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AA seq
712 aa
AA seq
DB search
MARELVDERSTSFAAHKRRKTTDSVGPQPENATIVDSQPGKDPSPFKFTWRIERFSWRNE
IKLCSDVFDVGGYKWHVIIFPEGDNAMDHLSMYFGVADSENLPNGWSIYAQFTMSLVNQI
NAEDSVTKDLRHRFNEQECDWGEPSFIPLDELSDPSRGYVVNNTLVVEVEVTRNVDEKDI
ADHVRERLKKDQKVQKHKNKENTEAHLYTIIRVVRDEDLAQQIGKDIYFDLVDPDKVSSF
RVPKNTTFKDFKKLLAKEFDIPAGFQRFWYWARSQNHTYRPIRPMRQTEEARSVGQIVLF
LEVERGPDLRPMAPVPVTMRKHDILLFFKLYDPEKEELRYVGRLFVNCYSNPSAILARIN
KLAGYDLDEEIELYEEIEFEPNVKCDPVDKKLTFTESKLNNGAIICFQKASAVDNEKHFR
YPDVPSYMKYVHNRQVPICLSDIEPKDEESLEEKNENIISEETNVDKNIEAQQSKGENEG
TSKSNTSKLVSIDSEEFDAMVDEDVIAAIDRVLSEGITLSLKSQHSVQGREYSKRDPNLP
EQLLQELRDIAFKGDLVEKLKEGLTSKVNFNAVKEKIDANADAFSSLQLEQVGAVVNLLN
NIVRMLEKIENLKKERNIAKKSTDQDSEALKETRQKILNSMTSFTNDQTELNSLDAQIAK
LQEDRAKIAEIQDQEKDKITSLNKDVKSIFQHLVDDQIKLKSVGRSNSGNSI
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atggcaagagaactcgtagatgaaagaagtacctcttttgcagctcataagagaagaaag
acaacagattcagtaggtcctcaacctgaaaatgccaccattgtggatagccagcctggc
aaggatccttctccatttaaattcacatggagaattgaaagattttcttggaggaacgag
ataaagctctgttcagatgtatttgatgttgggggctataaatggcatgtaattattttc
ccagaaggggacaatgcgatggaccatttgtccatgtattttggcgttgcagattcagaa
aatttgcccaacggttggagtatttatgcacagtttaccatgtctttagttaatcaaatc
aatgctgaggactctgtgacaaaagacttgcggcaccgattcaatgaacaagaatgtgat
tggggcgagccgtccttcatacctcttgatgaattatctgatccttcaagagggtatgtt
gtgaataatactcttgtagttgaagttgaggtaacacgcaatgtggatgagaaagacatc
gctgaccatgtaagggagaggttgaagaaagaccagaaagtacaaaagcacaaaaataaa
gaaaacacagaggctcacctctacactattataagggtggtacgagatgaagaccttgca
caacagattggaaaggatatatattttgatcttgttgaccctgacaaagtgagcagtttt
cgtgttcccaagaatacgacatttaaagatttcaagaaattgcttgctaaagagtttgac
ataccggctggattccagcgcttttggtattgggcaaggagtcaaaaccatacatatcgt
cctattcggccaatgagacaaacagaggaagcaagaagcgttggacaaattgtattgttt
ttggaagtcgagcgtggaccggatttacgccccatggcaccagtaccagtcactatgaga
aagcatgacatattactttttttcaagttatatgatcctgaaaaagaagagctgcgttat
gttggaaggctctttgttaactgttatagtaacccgtcagcaattttagcaaggataaat
aaattggctggttatgatcttgatgaagagattgaactttatgaggaaattgagtttgaa
ccaaatgttaaatgtgatcctgttgacaagaaattaacatttacagaaagcaagttgaac
aatggtgctattatatgctttcagaaagcttctgcagtggataacgagaaacatttccgc
tatcccgatgtgccttcatacatgaaatatgtgcacaatcgccaggttcctatttgtctc
tcagacatagaacccaaagatgaagaatcgttagaggagaaaaacgaaaatattatatcc
gaagaaacaaatgttgacaaaaacattgaagctcaacagtcaaaaggggaaaatgaaggt
accagcaaatccaacacttcaaaattagtcagcatagactctgaagaatttgatgctatg
gtagatgaggatgtcattgcggcaattgacagagttttatcggaagggattactctttcc
ttaaaatcccagcattctgtccaaggacgagaatactcaaaacgggatcccaatctccct
gagcaacttcttcaggaattaagggatattgcttttaaaggagacttggttgaaaaactt
aaagaaggtctcacttctaaagttaatttcaacgcagtcaaggaaaaaattgacgctaat
gctgatgcattttcctctctccaattagaacaagtcggtgctgttgttaaccttctcaac
aacattgtgaggatgcttgaaaaaattgaaaatttgaaaaaagagcgaaacatagccaag
aagagcactgaccaagatagtgaagcattgaaggaaaccagacagaaaatattgaactca
atgacttcctttacaaacgaccaaacagaactcaactctcttgatgctcagattgcaaaa
ctacaagaagacagggccaaaattgctgagattcaagatcaagagaaagataagattaca
tctttgaataaagatgttaagtcaattttccagcacctcgttgatgatcaaatcaagttg
aaaagtgttggaagatcaaattccggaaactcaatctga
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