Medicago truncatula (barrel medic): 11433389
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Entry
11433389 CDS
T01716
Name
(RefSeq) THO complex subunit 5A
KO
K13174
THO complex subunit 5
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03013
Nucleocytoplasmic transport
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
11433389
09122 Translation
03013 Nucleocytoplasmic transport
11433389
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11433389
03041 Spliceosome [BR:
mtr03041
]
11433389
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
11433389
Spliceosome [BR:
mtr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
11433389
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
11433389
NCBI-ProteinID:
XP_003603050
UniProt:
G7J6E4
LinkDB
All DBs
Position
3:complement(50333149..50340475)
Genome browser
AA seq
807 aa
AA seq
DB search
MEDGEIEEGSIAMEEQNEQAFPNSSEDSKSDEESPYELLQNSKSSIESIISDILSIKKEA
KPKQLLRDLVTQMFLHFITLRQANRSILIEEDRVKMQTERAKAPVDFTTLQLHNLVYEKS
HYLKAIKACKDFKSKYPDIELVPEEEFFRDAPKDIKDLVLSKDSAHNLMLKRLNFELYQR
KELCKHHAKLELQKKILLETIANRKKFLTSLPSHLKSLKKASLPVQNQLGITHTKKLKQH
HSAELLPPALYVIYSQLLAQKEAFAEPIDLEIVGSLKDAQAFARSQANKDTGISTVMDSS
KLEDDVHDDEEDGQRRRKRPRRVEVKESPDQGGIFKSHPLKIIINVYEDESSDPKPAKLI
TLRFEYVVKLNTVCVGVEGSNDGPDNDILCNLFPNDTGLELPHQSAKLFVQNAMAFNTQR
TSRPYKWAQHLAGIDFLPEVSPLLPADNSEAAKSEDVVSGLTLYRQQNRVHTVLQRIRSR
RKAQLALLEQLESLTKLEWPLLSCKSVPWALHTPLCKLDGWSPIRALPVPSEASSPAIID
KEEHVQESTDVDVIENSGVTKGELDSMTEDGELPTLLPKRTKFDHSKQASLISKSIIPSL
NKVRSLSFKKGDDSSDFLLDTDSDFDEPAQVESEHEHSVSDYCATKSLSWMESGAKEFVL
VLSRKTNADERNVNLEAKIKISMEYPLRPPLFALSFCGRPSGEYHIENDGLEWYNELRAI
EAEVNLHMLKTLPVNEHNYVLAHQVSCLAMLFDYYLDDGSSSERTNCTTLVDVGLCKPVS
GGFLGRSFRGRDHRKTISWKDTKFTSN
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atggaagacggtgagatagaagaaggttcaatcgccatggaagaacaaaacgaacaagcc
tttcccaattcctcagaagattccaaatcggacgaagaatcaccctacgaattgcttcaa
aacagtaaatcttccattgaatcaatcatctccgatatcctctccatcaaaaaagaagct
aaacctaaacaactccttcgtgatctcgttactcaaatgttccttcacttcatcactctt
cgtcaggcgaatcgttcgattttgattgaggaggatcgggttaaaatgcagacagaacgc
gcgaaggcgccggtggattttacgactttgcagcttcataatttggtgtacgagaaaagt
cattatcttaaagccattaaggcttgtaaagattttaaatcgaagtatcctgatattgaa
cttgtgcctgaggaagagtttttccgagatgctccgaaagatataaaggatttggttttg
tcgaaagatagtgctcataatttgatgctcaagaggctcaatttcgagctatatcagcgt
aaagagctctgcaaacatcatgcaaaactggaactgcaaaagaaaatccttttggagact
attgcgaaccgaaagaagttcctgacaagtctcccttcacatcttaagtctcttaagaaa
gcatccttgcctgtacaaaaccagctaggaattacgcatacaaagaaactaaagcagcat
cattcagcagagttgcttccaccggctctttatgtgatttactcacagctattggctcag
aaagaggcctttgcagaacctattgatctggagattgtaggaagcctgaaagatgctcaa
gcttttgctcgcagtcaagccaacaaggacactggcatttccactgtcatggatagctcc
aaattggaagatgatgttcatgatgatgaagaagatggtcagagacgtagaaaaaggcca
aggagggtagaagtcaaggagagccctgaccaagggggtatattcaaaagtcacccactt
aaaatcattatcaatgtgtatgaagatgagtcttctgatcctaagcctgcgaaactcatt
acgctaaggtttgagtacgtggtgaagttgaatactgtatgtgttggagtagaaggatct
aatgatggtcctgacaatgacatcttgtgcaatttattccccaatgatacaggactcgag
cttccacaccagtcagctaagctctttgttcaaaatgctatggcgttcaatactcaaaga
acttcacgtccttacaaatgggctcagcacctggcaggaattgatttcttgcctgaggtg
tctccactgctccccgctgacaacagtgaagcagccaagagtgaagatgttgtatctggt
cttacattatatcgccaacagaaccgagtacatacagttctgcagagaattcgctcaagg
agaaaagctcagttggctcttctggaacagctagaatctcttacaaaacttgagtggcct
cttttgtcctgtaaaagtgttccatgggctttgcacactcccttgtgcaaattggatggc
tggtcacctataagagccctacctgtgcctagtgaagcttcgtctccggctatcatagat
aaagaggagcatgttcaggaatcaacggatgttgatgtgattgaaaattctggtgtcaca
aaaggagaactggatagtatgacggaagatggcgagcttccaactttgcttccaaagagg
actaagtttgatcactccaagcaagctagcttaatttcaaaaagcatcattccttcactt
aataaagtcaggtccctgagtttcaaaaaaggtgatgatagttctgatttcttgctggat
actgatagtgattttgatgagcctgcacaagtagaaagtgaacatgaacatagcgtatct
gattactgtgccacaaagtctctttcgtggatggaatctggtgcgaaggaatttgtcctt
gttcttagcagaaaaaccaatgcagatgaaagaaatgtgaatctagaagccaagatcaag
atcagtatggaatatcctctaaggcctcctctttttgcattgagtttttgtggtagacct
tctggggagtaccatattgagaatgatggattggaatggtacaatgaacttcgtgcaata
gaggcggaggtcaacttacacatgctaaagacactacctgttaatgaacataattacgta
ttggctcatcaagtgagttgccttgccatgttattcgactactatttagatgacgggtca
tcatcagaaaggacaaattgcactaccttggttgatgttggcttatgcaagcctgttagt
ggtgggttcttgggaagatctttcagaggaagggatcaccggaagacgatctcctggaaa
gatacgaaatttacttccaactga
DBGET
integrated database retrieval system
